Skip to content

Issues: theislab/single-cell-best-practices

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

70 Open 123 Closed
70 Open 123 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Issue on page /preprocessing_visualization/quality_control.html
#306 opened Nov 12, 2024 by jffpviana
Chapter 16. converting from adata to SingleCellExperiment for adata_mono does not happen. question Further information is requested
#305 opened Nov 11, 2024 by dilkamur
6
Downstream analysis for sn-ATACseq is not shown in the contents? question Further information is requested
#304 opened Nov 10, 2024 by zyll123
Issue on page /conditions/perturbation_modeling.html
#302 opened Nov 4, 2024 by Dexterssssss
Have hide-output and expandable cells enhancement New feature or request
#299 opened Sep 21, 2024 by Zethson
Filter rarely expressed genes/features? question Further information is requested
#298 opened Sep 17, 2024 by kloot
Question about the ambient RNA correction question Further information is requested
#296 opened Aug 22, 2024 by Chaosli98
1
Usage of pvals for volcano plots instead of FDR-corrected p-values question Further information is requested
#295 opened Aug 21, 2024 by ramadatta
SoupX: rowSums(data) : 'x' must be an array of at least two dimensions bug Something isn't working
#294 opened Aug 13, 2024 by Urja25
How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html
#293 opened Aug 9, 2024 by yojetsharma
Issue on page /chromatin_accessibility/quality_control.html
#288 opened Jul 25, 2024 by trev-f
@AnnaChristina
Better sorting of pathways in /conditions/gsea_pathway.html?
#287 opened Jul 24, 2024 by VladimirShitov
Update ATAC-seq section with: Benchmarking computational methods for single-cell chromatin data analysis enhancement New feature or request
#286 opened Jul 19, 2024 by ivirshup
@Zethson
1
Issue on page /mechanisms/gene_regulatory_networks.html about env and versions of packages
#285 opened Jul 18, 2024 by franvz9
.dylib files not present in matrixStats (used by scry library)
#281 opened Jun 25, 2024 by as224
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases bug Something isn't working
#278 opened May 28, 2024 by ngvananh2508
Issue on page /preprocessing_visualization/quality_control.html
#275 opened May 17, 2024 by emiliosk
@AnnaChristina
Ambient RNA removal and doublet detection for Smart-seq2 dataset question Further information is requested
#273 opened Apr 26, 2024 by ngvananh2508
cellranger barcodes 3M file URL dead
#272 opened Apr 19, 2024 by chenqiuhao
@Zethson
3
Wrong plot titles in scCODA part bug Something isn't working
#271 opened Apr 19, 2024 by Zethson
@Zethson
Packages compatibility issue when creating an env using preprocessing.yml bug Something isn't working
#270 opened Apr 19, 2024 by inaciomdrs
@AnnaChristina
reach OverflowError in 8. Feature selection
#269 opened Apr 17, 2024 by Zethson
@AnnaChristina
Switch size factor analysis to pyDESeq2
#267 opened Apr 16, 2024 by abearab
@Zethson
2
Create PR preview enhancement New feature or request
#265 opened Apr 6, 2024 by Zethson
Pseudo-replicates in DE analysis
#261 opened Feb 22, 2024 by emdann
1
ProTip! Exclude everything labeled bug with -label:bug.