Update docs

docs/source/tables/titan_workflows/titan_clearlabs_optional_inputs.csv

@@ -20,8 +20,9 @@ titan_clearlabs,artic_primer_version,String,Version of the Artic PCR protocol us
 titan_clearlabs,normalise,Int,Value to normalize read counts,200
 titan_clearlabs,seq_method,String,Description of the sequencing methodology used to generate the input read data,ONT via Clear Labs WGS
 titan_clearlabs,pangolin_docker_image,String,Docker tag used for running Pangolin,staphb/pangolin:2.4.2-pangolearn-2021-05-19
-vadr,vadr_opts,String,Options for the v-annotate.pl VADR script,"--glsearch -s -r --nomisc --mkey sarscov2 --alt_fail lowscore,fstukcnf,insertnn,deletinn --mdir /opt/vadr/vadr-models/"
-vadr,minlen,Int,Minimum length subsequence to possibly replace Ns for the fasta-trim-terminal-ambigs.pl VADR script,50
-vadr,maxlen,Int,Maximum length for the fasta-trim-terminal-ambigs.pl VADR script,30000
 vadr,docker,String,Docker tag used for running VADR,staphb/vadr:1.2.1
+vadr,maxlen,Int,Maximum length for the fasta-trim-terminal-ambigs.pl VADR script,30000
+vadr,minlen,Int,Minimum length subsequence to possibly replace Ns for the fasta-trim-terminal-ambigs.pl VADR script,50
+vadr,vadr_opts,String,Options for the v-annotate.pl VADR script,"--glsearch -s -r --nomisc --mkey sarscov2 --alt_fail lowscore,fstukcnf,insertnn,deletinn --mdir /opt/vadr/vadr-models/"
+vadr,skip_length,Int,Minimum assembly length (unambiguous) to run vadr,10000
 version_capture,timezone,String,User time zone in valid Unix TZ string (e.g. America/New_York),None