Merge pull request #63 from tamnva/joss_manuscript

update vignettes
tamnva · Feb 8, 2024 · 8cdcd1b · 8cdcd1b
2 parents 6ccad85 + abc2bb4
commit 8cdcd1b
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/vignettes/run_SWATplus_with_given_parametersets.R b/vignettes/run_SWATplus_with_given_parametersets.R
@@ -116,7 +116,7 @@ knitr::opts_chunk$set(
 #  # Now calculate the 95PPU (SUFI2 approach) for each output variables, example for variable 1
 #  # TODO: change variable and percentiles as your wish
 #  variable <- 1
-#  percentiles <- c(0.0025, 0.5, 0.975)
+#  percentiles <- c(0.025, 0.5, 0.975)
 #  
 #  for (itime in 1:nrow(output[[variable]])){
 #    ppu <- as.numeric(quantile(output[[variable]][itime,],percentiles))

diff --git a/vignettes/run_SWATplus_with_given_parametersets.Rmd b/vignettes/run_SWATplus_with_given_parametersets.Rmd
@@ -150,7 +150,7 @@ output <- readAllOutVar(workingFolder, numTimesteps)
 # Now calculate the 95PPU (SUFI2 approach) for each output variables, example for variable 1
 # TODO: change variable and percentiles as your wish
 variable <- 1
-percentiles <- c(0.0025, 0.5, 0.975)
+percentiles <- c(0.025, 0.5, 0.975)
 
 for (itime in 1:nrow(output[[variable]])){
   ppu <- as.numeric(quantile(output[[variable]][itime,],percentiles))

diff --git a/vignettes/run_SWATplus_with_given_parametersets.html b/vignettes/run_SWATplus_with_given_parametersets.html
@@ -474,7 +474,7 @@ <h3>4. Processing model output</h3>
 <span id="cb3-10"><a href="#cb3-10" tabindex="-1"></a><span class="co"># Now calculate the 95PPU (SUFI2 approach) for each output variables, example for variable 1</span></span>
 <span id="cb3-11"><a href="#cb3-11" tabindex="-1"></a><span class="co"># </span><span class="al">TODO</span><span class="co">: change variable and percentiles as your wish</span></span>
 <span id="cb3-12"><a href="#cb3-12" tabindex="-1"></a>variable <span class="ot">&lt;-</span> <span class="dv">1</span></span>
-<span id="cb3-13"><a href="#cb3-13" tabindex="-1"></a>percentiles <span class="ot">&lt;-</span> <span class="fu">c</span>(<span class="fl">0.0025</span>, <span class="fl">0.5</span>, <span class="fl">0.975</span>)</span>
+<span id="cb3-13"><a href="#cb3-13" tabindex="-1"></a>percentiles <span class="ot">&lt;-</span> <span class="fu">c</span>(<span class="fl">0.025</span>, <span class="fl">0.5</span>, <span class="fl">0.975</span>)</span>
 <span id="cb3-14"><a href="#cb3-14" tabindex="-1"></a></span>
 <span id="cb3-15"><a href="#cb3-15" tabindex="-1"></a><span class="cf">for</span> (itime <span class="cf">in</span> <span class="dv">1</span><span class="sc">:</span><span class="fu">nrow</span>(output[[variable]])){</span>
 <span id="cb3-16"><a href="#cb3-16" tabindex="-1"></a>  ppu <span class="ot">&lt;-</span> <span class="fu">as.numeric</span>(<span class="fu">quantile</span>(output[[variable]][itime,],percentiles))</span>