Work in progress #32
Open
Work in progress #32
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Attempt to make IO scalable to other beamlines. Additions: - bqplot-imageGL for more responsive image viewer app - io module, changes to meta module, starting to split meta into various modules. Problems: - Currently, figures not displaying correctly in accordion widget. Apparently this works on windows 10 computer with the "reqs_working_bqplot.txt", and not on windows 11 with the environment from "reqs_nonworking_bqplot.txt"
made io more OO. added bqplot for faster visualization separated code into main functions under widgets
did not check last commit for recent changes in file structure. This fixes some imports.
Update main.py
selects range in histogram after plotting using the rm_high_low_int method.
- tested 6-2c import - tested tiff image import - tested tiff stack import - did not test ALS import
v0.0.7 - bugfix for xrm import - display normal high/low values when refreshing histogram
you can now use txrm in the case where the following settings are used in xmflex: 1. XANES level 1, TOMO level 2 2. Save TXRM for both refs and acquisition. 3. No averaging. 4. Probably relatively small datasets (not high resolution). Normalization works faster without dask. Also some bugfixes for analysis and alignment. - TODO: must eventually double check if flipping axis in this commit makes sense. There may be something weird going on with 360 compared to 180 degree simulated reconstructions.
performance improvements viewers checked downsampled data each time you clicked the refresh button. now they do not. saves ~10s of waiting for larger datasets.
-still needs backend support
no longer need this code
tested on CPU sirt, worked OK.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Please do not merge. This is just for me to monitor the progress