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percolator committed Oct 29, 2024
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9 changes: 3 additions & 6 deletions prep/class.md
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As a preparation for the Supervised Learning convocation, make yourself acquainted with the material below, and subsequently complete any tasks assigned to you in canvas.

2. Read the sections in the Data Science Book on [Classification](https://kaell.se/dsbook/classification), VaderPlas on [Model Validation](https://jakevdp.github.io/PythonDataScienceHandbook/05.03-hyperparameters-and-model-validation.html) and [Support vector machines](https://jakevdp.github.io/PythonDataScienceHandbook/05.07-support-vector-machines.html).
3. Read Noble, [What is a support vector machine](https://www.nature.com/articles/nbt1206-1565).
4. Investigate the jupyter notebook on [Supervised Learning](../nb/supervised/). There are associated study questions [here](../nb/supervised/questions.md).
5. Read previous years [questions and answers](../qa/supervisedlearning) on the material
2. Read the sections in the Data Science Book on [Classification](https://kaell.se/dsbook/classification), and [Validation] and [Support vector machines](https://www.kaell.se/dsbook/supervised/xval.html).
5. Perform the assignments in Canvas

## Additional Material;

1. StatQuest on [SVMs](https://www.youtube.com/watch?v=efR1C6CvhmE)
2. SVMs in [2 minutes](https://www.youtube.com/watch?v=_YPScrckx28)
1. Jake VanderPlas on [Model Validation](https://jakevdp.github.io/PythonDataScienceHandbook/05.03-hyperparameters-and-model-validation.html)
6 changes: 2 additions & 4 deletions prep/hypothesistesting.md
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As a preparation for the Hypothesis Testing convocation, make yourself acquainted with the material below, and subsequently complete any tasks assigned to you in canvas.

1. Watch the [Video Lecture on Hypothesis Testing](https://youtu.be/qeANWTCVbG0), and its [slides](slides/HypothesisTesting.pdf)
2. Read the chapter 8.3 and 9.1-9.5 in Downey on [hypothesis testing](http://greenteapress.com/thinkstats2/html/thinkstats2010.html#sec89). The associated code is available [here](https://github.com/AllenDowney/ThinkStats2/blob/master/code/chap09ex.ipynb).
* The book gives a different method for how to derive *p* values from samples than most other books. They derive *p* values from simulations, rather than to look them up from formulas or tables. If you prefer a traditional explanation, try e.g. [wikipedia's entry on *t* tests](https://en.wikipedia.org/wiki/Student%27s_t-test).
* Unfortunately, Downey does not give a distinct definition of a *p* value. The correct definition is ["the probability of obtaining test results at least as extreme as the results actually observed, under the assumption that the null hypothesis is correct."](https://en.wikipedia.org/wiki/P-value), however, in the glosary 9.13 an other definitions is given. Try to convince yourself that you understand why the glosaries definitions is problematic. See for instance [this wikipedia entry](https://en.wikipedia.org/wiki/Misuse_of_p-values).

2. Read the sections in the Data Science Book on [Hypothesis Testing](https://www.kaell.se/dsbook/statistics/significance.html).
3. Investigate the jupyter notebook on [Differential expression anlaysis of the TCGA breast cancer set](../nb/testing/). If you want some study questions we provide some [here](../nb/testing/questions.md)
4. Read previous years [questions and answers](../qa/testing) on the material.

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9 changes: 3 additions & 6 deletions prep/readme.md
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- [Regression](regression.md)
- [Classification, Valdiation](class.md)
- [Hypothesis Testing](hypothesistesting.md)
- [Multiple Testing](multipletesting.md)
- [Linear Models](linearmodels.md)


- [Supervised Learning](supervised.md)
- [SVMs, Neural Networks](svm_nn.md)
- [Clustering](clustering.md)

- [Hypothesis Testing](hypothesistesting.md)
- [Multiple Testing](multipletesting.md)

- [Principal Component Analysis](pca.md)
- [Variational Auto Encoder](vae.md)
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14 changes: 14 additions & 0 deletions prep/svm_nn.md
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## Preparations for lecture on SVMs an Neural Networks

As a preparation for the Supervised Learning convocation, make yourself acquainted with the material below, and subsequently complete any tasks assigned to you in canvas.

2. Read the sections in the Data Science Book on [SVMs](https://www.kaell.se/dsbook/supervised/svm.html), and [Neural Networks](https://www.kaell.se/dsbook/supervised/mlp.html).
4. Investigate the jupyter notebook on [Classification](https://www.kaell.se/dsbook/supervised/supervisedML.html).
5. Perform the assignments in Canvas

## Additional Material;

1. Jake VanderPlas on [Support vector machines](https://jakevdp.github.io/PythonDataScienceHandbook/05.07-support-vector-machines.html)
1. Noble, [What is a support vector machine](https://www.nature.com/articles/nbt1206-1565).
1. StatQuest on [SVMs](https://www.youtube.com/watch?v=efR1C6CvhmE)
2. SVMs in [2 minutes](https://www.youtube.com/watch?v=_YPScrckx28)

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