[CI] replace usage of miniconda with micromamba
#122
Workflow file for this run
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| name: test | |
| on: | |
| push: | |
| paths: | |
| - '**/*.ipynb' | |
| - '**/*.yml' | |
| - '**/*.yaml' | |
| - '**/*.py' | |
| pull_request: | |
| paths: | |
| - '**/*.ipynb' | |
| - '**/*.yml' | |
| - '**/*.yaml' | |
| - '**/*.py' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| build: | |
| name: build environment | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: roman-data-workshop-env | |
| environment-file: 00_install/environment.yml | |
| create-args: >- | |
| conda | |
| cache-environment: true | |
| cache-downloads: true | |
| init-shell: bash | |
| - run: python ./00_install/verify_install.py | |
| - run: conda env export > roman-data-workshop-env-${{ github.sha }}.yml | |
| - uses: actions/[email protected] | |
| with: | |
| name: roman-data-workshop-env-${{ github.sha }}.yml | |
| path: roman-data-workshop-env-${{ github.sha }}.yml | |
| data: | |
| name: download data | |
| needs: [ build ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/cache@v3 | |
| id: data_cache | |
| with: | |
| path: data/ | |
| key: data-${{ hashFiles('data/download.py') }} | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: roman-data-workshop-env | |
| environment-file: 00_install/environment.yml | |
| create-args: >- | |
| conda | |
| cache-environment: true | |
| cache-downloads: true | |
| init-shell: bash | |
| if: steps.data_cache.outputs.cache-hit != 'true' | |
| - run: python data/download.py | |
| if: steps.data_cache.outputs.cache-hit != 'true' | |
| test: | |
| name: run notebooks | |
| needs: [ build, data ] | |
| runs-on: ubuntu-latest | |
| env: | |
| CRDS_SERVER_URL: https://roman-crds-test.stsci.edu | |
| CRDS_PATH: ~/crds_cache | |
| CRDS_CLIENT_RETRY_COUNT: 3 | |
| CRDS_CLIENT_RETRY_DELAY_SECONDS: 20 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: roman-data-workshop-env | |
| environment-file: 00_install/environment.yml | |
| create-args: >- | |
| conda | |
| cache-environment: true | |
| cache-downloads: true | |
| init-shell: bash | |
| - run: echo "name=crds_context::$(crds list --operational-context)" >> $GITHUB_OUTPUT | |
| id: crds_context | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CRDS_PATH }} | |
| key: crds-jwst-datamodels-${{ steps.crds_context.outputs.crds_context }} | |
| if: steps.crds_context.outputs.crds_context != '' | |
| - run: crds sync --contexts ${{ steps.crds_context.outputs.crds_context }} | |
| if: steps.crds_context.outputs.crds_context != '' | |
| - uses: actions/cache@v3 | |
| with: | |
| path: data/ | |
| key: data-${{ hashFiles('data/download.py') }} | |
| - run: python data/download.py | |
| - run: pip install nbcollection | |
| - run: python -m nbcollection execute . |