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johanneskoester committed Oct 27, 2023
1 parent f585955 commit 76d5154
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions snakemake_executor_plugin_slurm/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@
pass_envvar_declarations_to_cmd=False,
auto_deploy_default_storage_provider=False,
# wait a bit until slurmdbd has job info available
init_seconds_before_status_checks=40
init_seconds_before_status_checks=40,
)


Expand Down Expand Up @@ -135,7 +135,7 @@ def run_job(self, job: JobExecutorInterface):
# (see https://github.com/snakemake/snakemake/issues/2014)
call += f" -D {self.workflow.workdir_init}"
# and finally the job to execute with all the snakemake parameters
call += f" --wrap=\"{exec_job}\""
call += f' --wrap="{exec_job}"'

self.logger.debug(f"sbatch call: {call}")
try:
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