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cdo no longer required
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smnorris committed Feb 21, 2024
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Expand Up @@ -37,13 +37,6 @@ An `environment.yml` file is provided to install the required tools:
conda env create -f environment.yml
conda activate bcfishpass

Note that `cdo` is required for processing NetCDF discharge files, but this tool is not currently included in the conda environment.
If processing discharge based habitat models, install `cdo` separately:

- `conda install cdo` (if your system supports this, this may not work on ARM based Macs)
- `brew install cdo`
- install from [from source](https://code.mpimet.mpg.de/projects/cdo/wiki/Cdo#Download-Compile-Install)

If the database you are working with does not already exist, create it:

createdb bcfishpass
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