capitalization convention

smith-chem-wisc · Nov 7, 2023 · 5e09c14 · 5e09c14
1 parent c610791
commit 5e09c14
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/mzLib/Proteomics/PSM/PsmFromTsv.cs b/mzLib/Proteomics/PSM/PsmFromTsv.cs
@@ -158,7 +158,7 @@ public PsmFromTsv(string line, char[] split, Dictionary<string, int> parsedHeade
             RetentionTime = (parsedHeader[PsmTsvHeader.Ms2ScanRetentionTime] < 0) ? null : (double?)double.Parse(spl[parsedHeader[PsmTsvHeader.Ms2ScanRetentionTime]].Trim(), CultureInfo.InvariantCulture);
             PEP = double.Parse(spl[parsedHeader[PsmTsvHeader.PEP]].Trim(), CultureInfo.InvariantCulture);
             PEP_QValue = double.Parse(spl[parsedHeader[PsmTsvHeader.PEP_QValue]].Trim(), CultureInfo.InvariantCulture);
-            VariantCrossingIons = findVariantCrossingIons();
+            VariantCrossingIons = FindVariantCrossingIons();
             SpectralAngle = (parsedHeader[PsmTsvHeader.SpectralAngle] < 0) ? null : (double?)double.Parse(spl[parsedHeader[PsmTsvHeader.SpectralAngle]].Trim(), CultureInfo.InvariantCulture);
 
             //For crosslinks
@@ -546,7 +546,7 @@ private static Dictionary<int, List<MatchedFragmentIon>> ReadChildScanMatchedIon
 
         // finds the ions that contain variant residues using the position in IdentifiedSequenceVariations. When the variation spans 
         // multiple residues, if any part is contained in an ion, the ion is marked as variant crossing.
-        private List<MatchedFragmentIon> findVariantCrossingIons()
+        private List<MatchedFragmentIon> FindVariantCrossingIons()
         {
             List<MatchedFragmentIon> variantCrossingIons = new List<MatchedFragmentIon>();
 

diff --git a/mzLib/Test/TestPsmFromTsv.cs b/mzLib/Test/TestPsmFromTsv.cs
@@ -36,7 +36,7 @@ public static void ReadVariantPsms()
         {
             string psmFile = @"TestData\VariantCrossTest.psmtsv";
             List<PsmFromTsv> parsedPsms = PsmTsvReader.ReadTsv(psmFile, out var warnings);
-            Assert.AreEqual(5, parsedPsms.Count);
+            Assert.AreEqual(15, parsedPsms.Count);
         }
 
         [Test]