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usethis::use_tidy_github_actions()
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simonpcouch committed Oct 15, 2024
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1 change: 1 addition & 0 deletions .Rbuildignore
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Expand Up @@ -11,3 +11,4 @@ inst/figs/
.env
inst/slides/
man-roxygen
^codecov\.yml$
63 changes: 63 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: R-CMD-check.yaml

permissions: read-all

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}

- {os: windows-latest, r: 'release'}
# use 4.0 or 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: 'oldrel-4'}

- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
85 changes: 85 additions & 0 deletions .github/workflows/pr-commands.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
issue_comment:
types: [created]

name: pr-commands.yaml

permissions: read-all

jobs:
document:
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }}
name: document
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::roxygen2
needs: pr-document

- name: Document
run: roxygen2::roxygenise()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add man/\* NAMESPACE
git commit -m 'Document'
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

style:
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
name: style
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

- uses: r-lib/actions/setup-r@v2

- name: Install dependencies
run: install.packages("styler")
shell: Rscript {0}

- name: Style
run: styler::style_pkg()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add \*.R
git commit -m 'Style'
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
61 changes: 61 additions & 0 deletions .github/workflows/test-coverage.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr, any::xml2
needs: coverage

- name: Test coverage
run: |
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
2 changes: 2 additions & 0 deletions README.Rmd
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Expand Up @@ -18,6 +18,8 @@ knitr::opts_chunk$set(
<!-- badges: start -->
[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![CRAN status](https://www.r-pkg.org/badges/version/pal)](https://CRAN.R-project.org/package=pal)
[![R-CMD-check](https://github.com/simonpcouch/pal/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/simonpcouch/pal/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/simonpcouch/pal/graph/badge.svg)](https://app.codecov.io/gh/simonpcouch/pal)
<!-- badges: end -->

Pals are persistent, ergonomic LLM assistants designed to help you complete repetitive, hard-to-automate tasks quickly. After selecting some code, press the keyboard shortcut you've chosen to trigger the pal addin (we suggest `Ctrl+Cmd+P`), select the pal, and watch your code be rewritten.
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3 changes: 3 additions & 0 deletions README.md
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Expand Up @@ -9,6 +9,9 @@
experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![CRAN
status](https://www.r-pkg.org/badges/version/pal)](https://CRAN.R-project.org/package=pal)
[![R-CMD-check](https://github.com/simonpcouch/pal/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/simonpcouch/pal/actions/workflows/R-CMD-check.yaml)
[![Codecov test
coverage](https://codecov.io/gh/simonpcouch/pal/graph/badge.svg)](https://app.codecov.io/gh/simonpcouch/pal)
<!-- badges: end -->

Pals are persistent, ergonomic LLM assistants designed to help you
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14 changes: 14 additions & 0 deletions codecov.yml
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comment: false

coverage:
status:
project:
default:
target: auto
threshold: 1%
informational: true
patch:
default:
target: auto
threshold: 1%
informational: true

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