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@@ -11,3 +11,4 @@ inst/figs/ | |
.env | ||
inst/slides/ | ||
man-roxygen | ||
^codecov\.yml$ |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
# | ||
# NOTE: This workflow is overkill for most R packages and | ||
# check-standard.yaml is likely a better choice. | ||
# usethis::use_github_action("check-standard") will install it. | ||
on: | ||
push: | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
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name: R-CMD-check.yaml | ||
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permissions: read-all | ||
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jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
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name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macos-latest, r: 'release'} | ||
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- {os: windows-latest, r: 'release'} | ||
# use 4.0 or 4.1 to check with rtools40's older compiler | ||
- {os: windows-latest, r: 'oldrel-4'} | ||
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | ||
- {os: ubuntu-latest, r: 'release'} | ||
- {os: ubuntu-latest, r: 'oldrel-1'} | ||
- {os: ubuntu-latest, r: 'oldrel-2'} | ||
- {os: ubuntu-latest, r: 'oldrel-3'} | ||
- {os: ubuntu-latest, r: 'oldrel-4'} | ||
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env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
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steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/setup-pandoc@v2 | ||
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
use-public-rspm: true | ||
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::rcmdcheck | ||
needs: check | ||
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- uses: r-lib/actions/check-r-package@v2 | ||
with: | ||
upload-snapshots: true | ||
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
issue_comment: | ||
types: [created] | ||
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name: pr-commands.yaml | ||
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permissions: read-all | ||
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jobs: | ||
document: | ||
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }} | ||
name: document | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
permissions: | ||
contents: write | ||
steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/pr-fetch@v2 | ||
with: | ||
repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::roxygen2 | ||
needs: pr-document | ||
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- name: Document | ||
run: roxygen2::roxygenise() | ||
shell: Rscript {0} | ||
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- name: commit | ||
run: | | ||
git config --local user.name "$GITHUB_ACTOR" | ||
git config --local user.email "[email protected]" | ||
git add man/\* NAMESPACE | ||
git commit -m 'Document' | ||
- uses: r-lib/actions/pr-push@v2 | ||
with: | ||
repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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style: | ||
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }} | ||
name: style | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
permissions: | ||
contents: write | ||
steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/pr-fetch@v2 | ||
with: | ||
repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
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- uses: r-lib/actions/setup-r@v2 | ||
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- name: Install dependencies | ||
run: install.packages("styler") | ||
shell: Rscript {0} | ||
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- name: Style | ||
run: styler::style_pkg() | ||
shell: Rscript {0} | ||
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- name: commit | ||
run: | | ||
git config --local user.name "$GITHUB_ACTOR" | ||
git config --local user.email "[email protected]" | ||
git add \*.R | ||
git commit -m 'Style' | ||
- uses: r-lib/actions/pr-push@v2 | ||
with: | ||
repo-token: ${{ secrets.GITHUB_TOKEN }} |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
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name: test-coverage.yaml | ||
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permissions: read-all | ||
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jobs: | ||
test-coverage: | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
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steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::covr, any::xml2 | ||
needs: coverage | ||
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- name: Test coverage | ||
run: | | ||
cov <- covr::package_coverage( | ||
quiet = FALSE, | ||
clean = FALSE, | ||
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
) | ||
covr::to_cobertura(cov) | ||
shell: Rscript {0} | ||
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- uses: codecov/codecov-action@v4 | ||
with: | ||
fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | ||
file: ./cobertura.xml | ||
plugin: noop | ||
disable_search: true | ||
token: ${{ secrets.CODECOV_TOKEN }} | ||
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- name: Show testthat output | ||
if: always() | ||
run: | | ||
## -------------------------------------------------------------------- | ||
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
shell: bash | ||
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- name: Upload test results | ||
if: failure() | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
name: coverage-test-failures | ||
path: ${{ runner.temp }}/package |
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comment: false | ||
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coverage: | ||
status: | ||
project: | ||
default: | ||
target: auto | ||
threshold: 1% | ||
informational: true | ||
patch: | ||
default: | ||
target: auto | ||
threshold: 1% | ||
informational: true |