Update the license to GPLv3

siminegroup · May 16, 2022 · 32d006d · 32d006d
1 parent 390a7ad
commit 32d006d
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diff --git a/LICENSE b/LICENSE
diff --git a/analysisTools.py b/analysisTools.py
@@ -1,3 +1,24 @@
+'''
+E2EDNA 2.0 - OpenMM Implementation of E2EDNA !
+
+An automated pipeline for simulating DNA aptamers complexed with target ligands (peptide, DNA, RNA or small molecules).
+    
+Copyright (C) 2022 Michael Kilgour, Tao Liu and Lena Simine
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <https://www.gnu.org/licenses/>.
+'''
+
 # tools for trajectory analysis
 from utils import printRecord
 import numpy as np

diff --git a/interfaces.py b/interfaces.py
@@ -1,3 +1,25 @@
+'''
+E2EDNA 2.0 - OpenMM Implementation of E2EDNA !
+
+An automated pipeline for simulating DNA aptamers complexed with target ligands (peptide, DNA, RNA or small molecules).
+    
+Copyright (C) 2022 Michael Kilgour, Tao Liu and Lena Simine
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <https://www.gnu.org/licenses/>.
+'''
+
+
 """
 interfaces for other major software used by E2EDNA
 MacroMolecule Builder (MMB)

diff --git a/main.py b/main.py
@@ -4,21 +4,23 @@
 E2EDNA 2.0 - OpenMM Implementation of E2EDNA !
 
 An automated pipeline for simulating DNA aptamers complexed with target ligands (peptide, DNA, RNA or small molecules).
+    
+Copyright (C) 2022 Michael Kilgour, Tao Liu and Lena Simine
 
-Copyright 2022 Michael Kilgour, Tao Liu and Lena Simine
-
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
 
-       http://www.apache.org/licenses/LICENSE-2.0
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
 
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <https://www.gnu.org/licenses/>.
 '''
+
 import argparse
 import glob
 import os

diff --git a/opendna.py b/opendna.py
@@ -1,3 +1,24 @@
+'''
+E2EDNA 2.0 - OpenMM Implementation of E2EDNA !
+
+An automated pipeline for simulating DNA aptamers complexed with target ligands (peptide, DNA, RNA or small molecules).
+    
+Copyright (C) 2022 Michael Kilgour, Tao Liu and Lena Simine
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <https://www.gnu.org/licenses/>.
+'''
+
 import sys
 import glob
 import shutil

diff --git a/utils.py b/utils.py
@@ -1,3 +1,24 @@
+'''
+E2EDNA 2.0 - OpenMM Implementation of E2EDNA !
+
+An automated pipeline for simulating DNA aptamers complexed with target ligands (peptide, DNA, RNA or small molecules).
+    
+Copyright (C) 2022 Michael Kilgour, Tao Liu and Lena Simine
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <https://www.gnu.org/licenses/>.
+'''
+
 """
 Utitilies
 """