Projects Using SIMDe

The following projects are known to use SIMDe:

• Bowtie 2 — an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
• HH-SUITE ­— an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
• LightZone — professional-level digital darkroom and photo editor for Mac, Windows, and Linux. It includes RAW processing and editing.
• MACS — Model-based Analysis for ChIP-Seq
• MMseqs2 — ultra fast and sensitive sequence search and clustering suite
• OBS Studio — free and open source software for live streaming and screen recording
• parasail — Pairwise Sequence Alignment Library
• pbcopper — The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications.
• plink2 — whole-genome association analysis toolset
• Spoa ­— c++ implementation of the partial order alignment algorithm which is used to generate consensus sequences
• Surge — an open source digital synthesizer
• wabt - The WebAssembly Binary Toolkit, a suite of tools for WebAssembly
• scikit-bio - Python package providing data structures, algorithms, and educational resources for bioinformatics.
• vg - variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
• Emscripten - a complete compiler toolchain to WebAssembly, using LLVM, with a special focus on speed, size, and the Web platform.
• Raptor - pre-filter for querying very large collections of nucleotide sequences\
• SuperTuxKart - 3D arcade racer with a variety of characters, tracks, and modes to play
• rna-star - ultrafast universal RNA-seq aligner
• abPOA - a SIMD-based C library for fast partial order alignment using adaptive band
• hhsuite - sensitive protein sequence searching based on HMM-HMM alignment
• Boxedwine - an emulator that runs Windows applications
• VVdeC - H.266/VVC software decoder
• VVenC - H.266/VVC software encoder
• Klein - an implementation of P(R*_{3, 0, 1}), aka 3D Projective Geometric Algebra
• sfizz - SFZ parser and synth c++ library, providing AU / LV2 / VST3 plugins and JACK standalone client
• Foldseek - protein structure search
• Firefox - builds libsoundtouch, lz4, and RLBox for WASM via SIMDe translation of SSE instrinsics to WASM SIMD128.
• vectorscan - A portable fork of the high-performance regular expression matching library
• OpenAirInterface - 5G Wireless Implementation
• Kitty - Cross-platform, fast, feature-rich, GPU based terminal
• FASTA - tools for searching collections of biological sequences
• webkit - the browser engine used by Safari, Mail, App Store and many other applications on macOS, iOS and Linux.
• Serial Studio - Flexible data visualization software for embedded devices and projects.

If you are using SIMDe, please add your project to the list.

Additionally, distro patches exist for several additional projects; see Debian's wiki for an incomplete list.