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Handle mask with URL for support for HDF5
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@@ -31,7 +31,7 @@ | |
__contact__ = "[email protected]" | ||
__license__ = "MIT" | ||
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France" | ||
__date__ = "13/12/2024" | ||
__date__ = "19/12/2024" | ||
__status__ = "development" | ||
__docformat__ = 'restructuredtext' | ||
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@@ -291,18 +291,27 @@ def parse(self, sysargv=None, with_config=False): | |
config["input_data"] = [(i, None) for i in self.inputfiles] | ||
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if options.mask: | ||
mask = urlparse(options.mask).path | ||
urlmask = urlparse(options.mask) | ||
elif ai.get("do_mask", False) or ai.get("mask_file", None): | ||
urlmask = urlparse(ai.get("mask_file", None)) | ||
elif config.get("do_mask", False) or config.get("mask_file", None): | ||
mask = urlparse(config.get("mask_file", None)).path | ||
# compatibility with elder config files... | ||
deprecated_warning("Config of mask no more top-level, but in ai config group", "mask_file", deprecated_since="2024.12.0") | ||
urlmask = urlparse(config.get("mask_file", None)) | ||
else: | ||
mask = "" | ||
if os.path.isfile(mask): | ||
logger.info("Reading Mask file from: %s", mask) | ||
self.mask = os.path.abspath(mask) | ||
urlmask = urlparse("") | ||
if "::" in urlmask.path: | ||
mask_filename, idx = urlmask.path.split("::", 1) | ||
mask_filename = os.path.abspath(mask_filename) | ||
urlmask = urlparse(f"fabio://{mask_filename}?slice={idx}") | ||
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if os.path.isfile(urlmask.path): | ||
logger.info("Reading Mask file from: %s", urlmask.path) | ||
self.mask = urlmask.geturl() | ||
ai["mask_file"] = self.mask | ||
ai["do_mask"] = True | ||
else: | ||
logger.warning("No such mask file %s", mask) | ||
logger.warning("No such mask file %s", urlmask.path) | ||
if options.poni: | ||
if os.path.isfile(options.poni): | ||
logger.info("Reading PONI file from: %s", options.poni) | ||
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@@ -32,7 +32,7 @@ | |
__contact__ = "[email protected]" | ||
__license__ = "MIT" | ||
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France" | ||
__date__ = "11/12/2024" | ||
__date__ = "19/12/2024" | ||
__status__ = "development" | ||
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