update README #43
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| on: | |
| push: | |
| branches: [main, master] | |
| tags: ['v*', 'build*'] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: "${{ matrix.config.os }} (R: ${{ matrix.config.r }}, Rust: ${{ matrix.config.rust }})" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', rust: 'stable'} | |
| - {os: macOS-latest, r: 'release', rust: 'stable'} | |
| - {os: ubuntu-18.04, r: 'release', rust: 'stable', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| # - {os: ubuntu-18.04, r: 'devel', rust: 'stable', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | |
| # - {os: ubuntu-18.04, r: 'release', rust: 'nightly', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| # Note: In the case of pure Rust code, the result binaries have no | |
| # difference between the legacy toolchain and the UCRT toolchain. | |
| # So, this is probably unnecessary, but leave this as-is as this | |
| # might be eventually useful for other package that depends on | |
| # some C/C++ library. | |
| - {os: windows-2022, r: 'devel-ucrt', rust: 'stable'} | |
| env: | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # used in tools/configure.R | |
| ABORT_WHEN_NO_CARGO: "true" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Rust | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: ${{ matrix.config.rust }} | |
| default: true | |
| - name: Additional Rust set up for Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| rustup target add i686-pc-windows-gnu | |
| rustup target add x86_64-pc-windows-gnu | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v1 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Install pak and query dependencies | |
| run: | | |
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | |
| saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ${{ env.R_LIBS_USER }}/* | |
| !${{ env.R_LIBS_USER }}/pak | |
| key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | |
| restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| pak::local_system_requirements(execute = TRUE) | |
| pak::pkg_system_requirements("rcmdcheck", execute = TRUE) | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| pak::local_install_dev_deps(upgrade = TRUE) | |
| pak::pkg_install(c("rcmdcheck", "pkgbuild")) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| args <- c("--no-manual", "--as-cran") | |
| if (identical("${{ matrix.config.r }}", "release")) { | |
| args <- c(args, "--force-multiarch") | |
| } | |
| rcmdcheck::rcmdcheck(args = args, error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test Rust Code | |
| # TODO | |
| # will throw error that `linking with `link.exe` failed: exit code: 1181` on windows | |
| # ignore for now but need to be fixed in the future | |
| if: runner.os != 'Windows' | |
| working-directory: ./src/rust | |
| run: cargo test | |
| - name: Build binaries | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| dir.create("./pkgbin") | |
| pkgbuild::build(binary = TRUE, dest_path = "./pkgbin") | |
| shell: Rscript {0} | |
| - name: Upload pkgbin | |
| if: startsWith(github.ref, 'refs/tags/') | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: pkgbin | |
| path: pkgbin | |
| # Upload prebuilt binaries for Windows | |
| - name: Tweak staticlib on Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| # list all staticlibs | |
| find ./check -name libymd.a | |
| mkdir ./staticlib | |
| # R-devel already drops 32bit Windows! | |
| if ( "$(Rscript -e 'cat(R.Version()$crt)')".Equals('ucrt') ) { | |
| mv ./check/ymd.Rcheck/00_pkg_src/ymd/src/rust/target/x86_64-pc-windows-gnu/release/libymd.a staticlib/ucrt-x86_64-pc-windows-gnu-libymd.a | |
| } else { | |
| mv ./check/ymd.Rcheck/00_pkg_src/ymd/src-x64/rust/target/x86_64-pc-windows-gnu/release/libymd.a staticlib/x86_64-pc-windows-gnu-libymd.a | |
| mv ./check/ymd.Rcheck/00_pkg_src/ymd/src-i386/rust/target/i686-pc-windows-gnu/release/libymd.a staticlib/i686-pc-windows-gnu-libymd.a | |
| } | |
| ls ./staticlib | |
| shell: pwsh | |
| # Upload prebuilt binaries for macOS | |
| - name: Tweak staticlib on macOS | |
| if: runner.os == 'macOS' && matrix.config.r == 'release' | |
| run: | | |
| # list all staticlibs | |
| find ./check -name libymd.a | |
| mkdir ./staticlib | |
| # Intel macOS | |
| mv ./check/ymd.Rcheck/00_pkg_src/ymd/src/rust/target/release/libymd.a staticlib/x86_64-apple-darwin-libymd.a | |
| # For M1 macOS | |
| rustup target add aarch64-apple-darwin | |
| . "${HOME}/.cargo/env" && cargo build --target=aarch64-apple-darwin --lib --release --manifest-path=./check/ymd.Rcheck/00_pkg_src/ymd/src/rust/Cargo.toml | |
| mv ./check/ymd.Rcheck/00_pkg_src/ymd/src/rust/target/aarch64-apple-darwin/release/libymd.a staticlib/aarch64-apple-darwin-libymd.a | |
| ls ./staticlib | |
| shell: pwsh | |
| - name: Upload staticlib | |
| uses: actions/upload-artifact@main | |
| if: startsWith(github.ref, 'refs/tags/') | |
| with: | |
| name: staticlib | |
| path: staticlib | |
| release: | |
| needs: R-CMD-check | |
| runs-on: ubuntu-latest | |
| # Do not run this on pull request | |
| if: startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/download-artifact@v2 | |
| - name: Checksum staticlib | |
| run: | | |
| cd staticlib | |
| sha256sum * > sha256sums.txt | |
| - name: Release staticlib | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: 'staticlib/*' | |
| - name: Release pkgbinary | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: "pkgbin/*" | |
| Coverage: | |
| needs: R-CMD-check | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Install nightly toolchain | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: nightly | |
| override: true | |
| - name: Install cargo-tarpaulin | |
| uses: actions-rs/[email protected] | |
| with: | |
| crate: cargo-tarpaulin | |
| version: latest | |
| use-tool-cache: true | |
| - name: Coverage with tarpaulin | |
| run: cargo tarpaulin --all --all-features --timeout 600 --out Lcov -- --test-threads 1 | |
| working-directory: ./src/rust | |
| - name: Upload coverage | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: ./src/rust/lcov.info |