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v0.8.0
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shenwei356 committed Apr 9, 2021
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## Current Version

- [TaxonKit v0.7.2](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.2)
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.7.2/total.svg)](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.2)
- `taxonkit lineage`:
- new flag `-R/--show-lineage-ranks` for appending ranks of all levels.
- reduce memory occupation and slightly speedup.
- `taxonkit filter`:
- flag `-E/--equal-to` supports multiple values.
- new flag `-n/--save-predictable-norank`: do not discard some special ranks without order when using -L, where rank of the closest higher node is still lower than rank cutoff.
- [TaxonKit v0.8.0](https://github.com/shenwei356/taxonkit/releases/tag/v0.8.0)
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.8.0/total.svg)](https://github.com/shenwei356/taxonkit/releases/tag/v0.8.0)
- `taxonkit reformat`:
- **new placeholder `{t}` for `subspecies/strain`, `{T}` for `strain`**. Thanks @wqssf102 for feedback.
- new flag `-S/--pseudo-strain` for using the node with lowest rank as strain name, only if which rank is lower than "species" and not "subpecies" nor "strain".
- **accept input of TaxIds via flag `-I/--taxid-field`**.
- **accept single taxonomy names**.
- *show warning message for TaxIds with the same lineage*. [#42](https://github.com/shenwei356/taxonkit/issues/42)
- better flag checking. [#40](https://github.com/shenwei356/taxonkit/issues/40)
- `taxonkit lca`:
- slightly speedup.
- `taxonkit genautocomplete`:
- support bash|zsh|fish/powershell

Links:

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OS |Arch |File, 备用镜像 |Download Count
:------|:---------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Linux |**64-bit**|[**taxonkit_linux_amd64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_linux_amd64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_linux_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_linux_amd64.tar.gz)
Linux |**arm64**|[**taxonkit_linux_arm64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_linux_arm64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_linux_arm64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_linux_arm64.tar.gz)
macOS |**64-bit**|[**taxonkit_darwin_amd64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_darwin_amd64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_darwin_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_darwin_amd64.tar.gz)
macOS |**arm64** |[**taxonkit_darwin_arm64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_darwin_arm64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_darwin_arm64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_darwin_arm64.tar.gz)
Windows|**64-bit**|[**taxonkit_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_windows_amd64.exe.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.7.2/taxonkit_windows_amd64.exe.tar.gz)
Linux |**64-bit**|[**taxonkit_linux_amd64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_linux_amd64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_linux_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_linux_amd64.tar.gz)
Linux |**arm64**|[**taxonkit_linux_arm64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_linux_arm64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_linux_arm64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_linux_arm64.tar.gz)
macOS |**64-bit**|[**taxonkit_darwin_amd64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_darwin_amd64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_darwin_amd64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_darwin_amd64.tar.gz)
macOS |**arm64** |[**taxonkit_darwin_arm64.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_darwin_arm64.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_darwin_arm64.tar.gz) |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_darwin_arm64.tar.gz)
Windows|**64-bit**|[**taxonkit_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_windows_amd64.exe.tar.gz),<br/> [备用镜像](http://app.shenwei.me/data/taxonkit/taxonkit_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/taxonkit/releases/download/v0.8.0/taxonkit_windows_amd64.exe.tar.gz)


## Installation
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## Previous Versions

- [TaxonKit v0.7.2](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.2)
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.7.2/total.svg)](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.2)
- `taxonkit lineage`:
- new flag `-R/--show-lineage-ranks` for appending ranks of all levels.
- reduce memory occupation and slightly speedup.
- `taxonkit filter`:
- flag `-E/--equal-to` supports multiple values.
- new flag `-n/--save-predictable-norank`: do not discard some special ranks without order when using -L, where rank of the closest higher node is still lower than rank cutoff.
- `taxonkit reformat`:
- **new placeholder `{t}` for `subspecies/strain`, `{T}` for `strain`**. Thanks @wqssf102 for feedback.
- new flag `-S/--pseudo-strain` for using the node with lowest rank as strain name, only if which rank is lower than "species" and not "subpecies" nor "strain".
- [TaxonKit v0.7.1](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.1)
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.7.1/total.svg)](https://github.com/shenwei356/taxonkit/releases/tag/v0.7.1)
- `taxonkit filter`:
Expand Down

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