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20 Open 36 Closed
20 Open 36 Closed
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Issues list

Add support for Zipped zarr files enhancement New feature or request
#123 opened Jan 14, 2025 by jeromekelleher Initial release
Force-samples defined on CLI but not used bug Something isn't working
#122 opened Jan 14, 2025 by jeromekelleher
Non-existant samples accepted by view bug Something isn't working
#121 opened Jan 14, 2025 by jeromekelleher
1
query -f "%GT" does not raise error bug Something isn't working
#119 opened Jan 14, 2025 by jeromekelleher
Support multiple input arguments in vcztools query enhancement New feature or request
#118 opened Jan 14, 2025 by jeromekelleher
Make exit status on error same as bcftools enhancement New feature or request
#117 opened Jan 14, 2025 by jeromekelleher
Python API for Zarr to cyvcf2
#112 opened Dec 5, 2024 by percyfal
9
Replace PyRanges with NCLS to avoid pandas dependency
#111 opened Dec 3, 2024 by tomwhite
1
Make robust to non-essential missing fields with clear interpretation
#107 opened Nov 21, 2024 by jeromekelleher
Handel or ignore non-standard dimensions
#99 opened Nov 13, 2024 by timothymillar
3
vcztools view: write performance
#94 opened Oct 18, 2024 by Will-Tyler
7
vcztools query: optimize query evaluation
#84 opened Sep 27, 2024 by Will-Tyler
2
vcztools view: INFO field computation performance
#79 opened Sep 9, 2024 by Will-Tyler
4
Add variant and sample filtering to query command
#73 opened Sep 2, 2024 by tomwhite
1
Add support for reading regions and targets from a file (-R/-T)
#72 opened Sep 2, 2024 by tomwhite
Support genotypes in filtering expressions
#71 opened Sep 2, 2024 by Will-Tyler
Code coverage
#56 opened Aug 15, 2024 by tomwhite
1
Add cd workflow and post initial package
#43 opened Aug 6, 2024 by jeromekelleher Initial release
2
Roundtrip testing with hypothesis-vcf
#31 opened Jul 22, 2024 by tomwhite Initial release
1
assert_vcfs_close doesn't handle missingness subtlety
#14 opened Jul 5, 2024 by jeromekelleher
1
ProTip! Updated in the last three days: updated:>2025-01-13.