[TEST] API patches

seqan · Feb 9, 2024 · 5cd2f94 · 5cd2f94
1 parent a5290a2
commit 5cd2f94
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diff --git a/test/api_stability/1.1.1/0001-API-Update-TDL.patch b/test/api_stability/1.1.1/0001-API-Update-TDL.patch
@@ -1,7 +1,7 @@
-From 27bc700234a23ea6c6c7337a427c4a3c6f2bbe55 Mon Sep 17 00:00:00 2001
+From ace25c7fffccdac9ccaf81329ada87f60021b5f9 Mon Sep 17 00:00:00 2001
 From: Simon Gene Gottlieb <[email protected]>
 Date: Thu, 5 Oct 2023 13:43:30 +0200
-Subject: [PATCH 1/3] [API] Update TDL
+Subject: [PATCH 1/5] [API] Update TDL
 
 ---
  test/unit/detail/format_ctd_test.cpp |  2 +-

diff --git a/test/api_stability/1.1.1/0002-API-Quoted-strings-and-paths.patch b/test/api_stability/1.1.1/0002-API-Quoted-strings-and-paths.patch
@@ -1,7 +1,7 @@
-From 09a51343b1ee29f245eeae8210d50cd74ac9b1b4 Mon Sep 17 00:00:00 2001
+From 7bf847b4991636a59f26ca89977e94f51edfbf11 Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Mon, 5 Feb 2024 16:02:03 +0100
-Subject: [PATCH 2/3] [API] Quoted strings and paths
+Subject: [PATCH 2/5] [API] Quoted strings and paths
 
 ---
  test/snippet/readme_sneak_peek.out            |  6 ++---

diff --git a/test/api_stability/1.1.1/0003-NOAPI-Update-copyright.patch b/test/api_stability/1.1.1/0003-NOAPI-Update-copyright.patch
@@ -1,7 +1,7 @@
-From 859b9d015379e0d708700225fa55dd31f7d2e2f5 Mon Sep 17 00:00:00 2001
+From f02ddb2f31a47da16742dbf612d780b328e7602b Mon Sep 17 00:00:00 2001
 From: Enrico Seiler <[email protected]>
 Date: Wed, 7 Feb 2024 13:31:22 +0100
-Subject: [PATCH 3/3] [NOAPI] Update copyright
+Subject: [PATCH 3/5] [NOAPI] Update copyright
 
 ---
  test/unit/detail/format_help_test.cpp | 10 +++++-----

diff --git a/test/api_stability/1.1.1/0004-INFRA-Update-TDL.patch b/test/api_stability/1.1.1/0004-INFRA-Update-TDL.patch
@@ -0,0 +1,73 @@
+From 9f040f8ccb8d304841d24d8ac4d67db0d06c370f Mon Sep 17 00:00:00 2001
+From: Enrico Seiler <[email protected]>
+Date: Fri, 9 Feb 2024 16:17:21 +0100
+Subject: [PATCH 4/5] [INFRA] Update TDL
+
+---
+ test/unit/detail/format_cwl_test.cpp | 28 +++++++++++++++++++++++++++-
+ 1 file changed, 27 insertions(+), 1 deletion(-)
+
+diff --git a/test/unit/detail/format_cwl_test.cpp b/test/unit/detail/format_cwl_test.cpp
+index 1d27cc3..eaf0cad 100644
+--- a/test/unit/detail/format_cwl_test.cpp
++++ b/test/unit/detail/format_cwl_test.cpp
+@@ -76,8 +76,16 @@ TEST(format_cwl_test, full_information)
+     parser.info.examples.push_back("example2");
+
+     std::string expected_short = "label: default\n"
+-                                 "doc: \"description\\ndescription2\\n\"\n"
++                                 "doc: \"description\\n"
++                                 "description2\\n"
++                                 "\"\n"
+                                  "inputs:\n"
++                                 "  positional_0:\n"
++                                 "    doc: this is a positional option.\n"
++                                 "    type: string?\n"
++                                 "  positional_1:\n"
++                                 "    doc: \"this is a positional option. Default: []\"\n"
++                                 "    type: string?\n"
+                                  "  int:\n"
+                                  "    doc: \"this is a int option. Default: 5\"\n"
+                                  "    type: long?\n"
+@@ -88,6 +96,12 @@ TEST(format_cwl_test, full_information)
+                                  "    type: long\n"
+                                  "    inputBinding:\n"
+                                  "      prefix: --jint\n"
++                                 "  flag:\n"
++                                 "    doc: this is a flag.\n"
++                                 "    type: boolean?\n"
++                                 "  kflag:\n"
++                                 "    doc: this is a flag.\n"
++                                 "    type: boolean?\n"
+                                  "outputs:\n"
+                                  "  []\n"
+                                  "cwlVersion: v1.2\n"
+@@ -196,6 +210,12 @@ TEST(format_cwl_test, subparser)
+         "label: default-index\n"
+         "doc: \"\"\n"
+         "inputs:\n"
++        "  positional_0:\n"
++        "    doc: this is a positional option.\n"
++        "    type: string?\n"
++        "  positional_1:\n"
++        "    doc: \"this is a positional option. Default: []\"\n"
++        "    type: string?\n"
+         "  int:\n"
+         "    doc: \"this is a int option. Default: 5\"\n"
+         "    type: long?\n"
+@@ -244,6 +264,12 @@ TEST(format_cwl_test, subparser)
+         "    type: string?\n"
+         "    inputBinding:\n"
+         "      prefix: --path05\n"
++        "  flag:\n"
++        "    doc: this is a flag.\n"
++        "    type: boolean?\n"
++        "  kflag:\n"
++        "    doc: this is a flag.\n"
++        "    type: boolean?\n"
+         "outputs:\n"
+         "  path04:\n"
+         "    type: File?\n"
+-- 
+2.43.0
+
diff --git a/test/api_stability/1.1.1/0004-INFRA-Update-TDL.patch.license b/test/api_stability/1.1.1/0004-INFRA-Update-TDL.patch.license
@@ -0,0 +1,3 @@
+SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
+SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
+SPDX-License-Identifier: BSD-3-Clause
diff --git a/test/api_stability/1.1.1/0005-INFRA-Use-seqan3-main-branch.patch b/test/api_stability/1.1.1/0005-INFRA-Use-seqan3-main-branch.patch
@@ -0,0 +1,25 @@
+From 3a7dfd8103806e97af6376e9173d686b67fb5b52 Mon Sep 17 00:00:00 2001
+From: Enrico Seiler <[email protected]>
+Date: Fri, 9 Feb 2024 18:13:36 +0100
+Subject: [PATCH 5/5] [INFRA] Use seqan3 main branch
+
+---
+ test/unit/detail/CMakeLists.txt | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/test/unit/detail/CMakeLists.txt b/test/unit/detail/CMakeLists.txt
+index 392f878..1f9a8e0 100644
+--- a/test/unit/detail/CMakeLists.txt
++++ b/test/unit/detail/CMakeLists.txt
+@@ -23,7 +23,7 @@ sharg_test (type_name_as_string_test.cpp)
+ sharg_test (version_check_debug_test.cpp)
+ sharg_test (version_check_release_test.cpp)
+
+-file (DOWNLOAD https://raw.githubusercontent.com/seqan/seqan3/master/include/seqan3/version.hpp
++file (DOWNLOAD https://raw.githubusercontent.com/seqan/seqan3/main/include/seqan3/version.hpp
+       ${CMAKE_BINARY_DIR}/include/seqan3/version.hpp)
+ sharg_test (seqan3_test.cpp)
+ target_include_directories (seqan3_test SYSTEM PUBLIC ${CMAKE_BINARY_DIR}/include)
+-- 
+2.43.0
+
diff --git a/test/api_stability/1.1.1/0005-INFRA-Use-seqan3-main-branch.patch.license b/test/api_stability/1.1.1/0005-INFRA-Use-seqan3-main-branch.patch.license
@@ -0,0 +1,3 @@
+SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
+SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
+SPDX-License-Identifier: BSD-3-Clause