Merge pull request #244 from eseiler/misc/allow_options_subcommand #378
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Coverage | |
| on: | |
| push: | |
| branches: | |
| # Push events to branches matching refs/heads/main | |
| - 'main' | |
| # Push events to branches matching refs/heads/release* | |
| - 'release*' | |
| # Trigger after PR was unlabeled | |
| pull_request: | |
| types: | |
| - unlabeled | |
| # Enables a manual trigger, may run on any branch | |
| workflow_dispatch: | |
| # Do not cancel on push events | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false # PRs will be canceled by the clang-format CI | |
| env: | |
| SHARG_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - name: "gcc13" | |
| compiler: "gcc-13" | |
| build: coverage | |
| build_type: Coverage | |
| steps: | |
| # How many commits do we need to fetch to also fetch the branch point? | |
| - name: Get fetch depth | |
| id: fetch_depth | |
| run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: sharg | |
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
| submodules: true | |
| - name: Setup toolchain | |
| uses: seqan/actions/setup-toolchain@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| ccache_size: 125M | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Install gcovr | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | |
| pip install gcovr==6.0 | |
| - name: Configure tests | |
| run: | | |
| mkdir sharg-build | |
| cd sharg-build | |
| cmake ../sharg/test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}" \ | |
| -DSHARG_VERBOSE_TESTS=OFF \ | |
| -DSHARG_COVERAGE_PARALLEL_LEVEL=2 | |
| make -j2 gtest_build yaml-cpp | |
| - name: Build tests | |
| env: | |
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
| GCOV: ${{ github.workspace }}/sharg/.github/workflows/scripts/gcov.sh | |
| run: | | |
| ccache -z | |
| cd sharg-build | |
| make -k -j2 | |
| ccache -sv | |
| - name: Submit coverage build | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{ github.workspace }}/sharg-build/sharg_coverage.xml | |
| root_dir: ${{ github.workspace }}/sharg |