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✨ Add colorblocks to baseplot similar to heatmap #3043

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✨ Add colorblocks to baseplot similar to heatmap #3043

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Azure Pipelines / scverse.scanpy failed May 2, 2024 in 21m 18s

Build #20240502.3 had test failures

5 errors / 0 warnings

Details

Tests

  • Failed: 131 (1.52%)
  • Passed: 7,835 (90.95%)
  • Other: 649 (7.53%)
  • Total: 8,615
Code coverage

  • 9762 of 12846 line covered (75.99%)

Annotations

Check failure on line 7813 in Build log

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@azure-pipelines azure-pipelines / scverse.scanpy

Build log #L7813 

Bash exited with code '1'.

Check failure on line 7823 in Build log

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@azure-pipelines azure-pipelines / scverse.scanpy

Build log #L7823 

Bash exited with code '1'.

Check failure on line 8128 in Build log

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@azure-pipelines azure-pipelines / scverse.scanpy

Build log #L8128 

Bash exited with code '1'.

Check failure on line 7718 in Build log

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@azure-pipelines azure-pipelines / scverse.scanpy

Build log #L7718 

Bash exited with code '1'.

Check failure on line 1 in scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot-fn0]

See this annotation in the file changed.

@azure-pipelines azure-pipelines / scverse.scanpy

scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot-fn0] 

image_comparer = <function image_comparer.<locals>.save_and_compare at 0x7f8bb10822a0>
id = 'dotplot'
fn = functools.partial(<function dotplot at 0x7f8bc828fc40>, groupby='cell_type', title='dotplot', dendrogram=True)

    @pytest.mark.parametrize(
        "id,fn",
        [
            (
                "dotplot",
                partial(
                    sc.pl.dotplot, groupby="cell_type", title="dotplot", dendrogram=True
                ),
            ),
            (
                "dotplot2",
                partial(
                    sc.pl.dotplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=7,
                    title="non categorical obs",
                    figsize=(7, 2.5),
                ),
            ),
            (
                "dotplot3",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    cmap="hot_r",
                    title="dot_max=0.7 dot_min=0.1, var_groups",
                    var_group_positions=[(0, 1), (9, 10)],
                    var_group_labels=["A", "B"],
                    dendrogram=True,
                ),
            ),
            (
                "dotplot_std_scale_group",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    use_raw=False,
                    dendrogram=True,
                    layer="test",
                    swap_axes=True,
                    title="swap_axes, layer=-1*X, scale=group\nsmallest_dot=10",
                    standard_scale="group",
                    smallest_dot=10,
                ),
            ),
            (
                "dotplot_dict",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    color_map="winter",
                    title="var as dict",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    title="matrixplot",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot_std_scale_var_dict",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    dendrogram=True,
                    standard_scale="var",
                    layer="test",
                    cmap="Blues_r",
                    title='scale var, custom colorbar_title, layer="test"',
                    colorbar_title="Scaled expression",
                ),
            ),
            (
                "matrixplot_std_scale_group",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    standard_scale="group",
                    title="scale_group, swap_axes",
                    swap_axes=True,
                ),
            ),
            (
                "matrixplot2",
                partial(
                    sc.pl.matrixplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=4,
                    title="non-categorical obs, custom figsize",
                    figsize=(8, 2.5),
                    cmap="RdBu_r",
                ),
            ),
            (
                "stacked_violin",
                partial(
                    sc.pl.stacked_violin,
                    groupby="cell_type",
                    use_raw=False,
                    title="stacked_violin",
                    dendrogram=True,
Raw output 
/home/vsts/work/1/s/scanpy/tests/conftest.py:115: AssertionError: Image files did not match.

Check failure on line 1 in scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot3-fn2]

See this annotation in the file changed.

@azure-pipelines azure-pipelines / scverse.scanpy

scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot3-fn2] 

image_comparer = <function image_comparer.<locals>.save_and_compare at 0x7f8bb09693a0>
id = 'dotplot3'
fn = functools.partial(<function dotplot at 0x7f8bc828fc40>, groupby='cell_type', dot_max=0.7, dot_min=0.1, cmap='hot_r', t..._max=0.7 dot_min=0.1, var_groups', var_group_positions=[(0, 1), (9, 10)], var_group_labels=['A', 'B'], dendrogram=True)

    @pytest.mark.parametrize(
        "id,fn",
        [
            (
                "dotplot",
                partial(
                    sc.pl.dotplot, groupby="cell_type", title="dotplot", dendrogram=True
                ),
            ),
            (
                "dotplot2",
                partial(
                    sc.pl.dotplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=7,
                    title="non categorical obs",
                    figsize=(7, 2.5),
                ),
            ),
            (
                "dotplot3",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    cmap="hot_r",
                    title="dot_max=0.7 dot_min=0.1, var_groups",
                    var_group_positions=[(0, 1), (9, 10)],
                    var_group_labels=["A", "B"],
                    dendrogram=True,
                ),
            ),
            (
                "dotplot_std_scale_group",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    use_raw=False,
                    dendrogram=True,
                    layer="test",
                    swap_axes=True,
                    title="swap_axes, layer=-1*X, scale=group\nsmallest_dot=10",
                    standard_scale="group",
                    smallest_dot=10,
                ),
            ),
            (
                "dotplot_dict",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    color_map="winter",
                    title="var as dict",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    title="matrixplot",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot_std_scale_var_dict",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    dendrogram=True,
                    standard_scale="var",
                    layer="test",
                    cmap="Blues_r",
                    title='scale var, custom colorbar_title, layer="test"',
                    colorbar_title="Scaled expression",
                ),
            ),
            (
                "matrixplot_std_scale_group",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    standard_scale="group",
                    title="scale_group, swap_axes",
                    swap_axes=True,
                ),
            ),
            (
                "matrixplot2",
                partial(
                    sc.pl.matrixplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=4,
                    title="non-categorical obs, custom figsize",
                    figsize=(8, 2.5),
                    cmap="RdBu_r",
                ),
            ),
            (
                "stacked_violin",
                partial(
                    sc.pl.stacked_violin,
                    groupby="cell_type",
Raw output 
/home/vsts/work/1/s/scanpy/tests/conftest.py:115: AssertionError: Image files did not match.

Check failure on line 1 in scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot_dict-fn4]

See this annotation in the file changed.

@azure-pipelines azure-pipelines / scverse.scanpy

scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot_dict-fn4] 

image_comparer = <function image_comparer.<locals>.save_and_compare at 0x7f8bb07b8a40>
id = 'dotplot_dict'
fn = functools.partial(<function dotplot at 0x7f8bc828fc40>, groupby='cell_type', dot_max=0.7, dot_min=0.1, color_map='winter', title='var as dict', dendrogram=True)

    @pytest.mark.parametrize(
        "id,fn",
        [
            (
                "dotplot",
                partial(
                    sc.pl.dotplot, groupby="cell_type", title="dotplot", dendrogram=True
                ),
            ),
            (
                "dotplot2",
                partial(
                    sc.pl.dotplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=7,
                    title="non categorical obs",
                    figsize=(7, 2.5),
                ),
            ),
            (
                "dotplot3",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    cmap="hot_r",
                    title="dot_max=0.7 dot_min=0.1, var_groups",
                    var_group_positions=[(0, 1), (9, 10)],
                    var_group_labels=["A", "B"],
                    dendrogram=True,
                ),
            ),
            (
                "dotplot_std_scale_group",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    use_raw=False,
                    dendrogram=True,
                    layer="test",
                    swap_axes=True,
                    title="swap_axes, layer=-1*X, scale=group\nsmallest_dot=10",
                    standard_scale="group",
                    smallest_dot=10,
                ),
            ),
            (
                "dotplot_dict",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    color_map="winter",
                    title="var as dict",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    title="matrixplot",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot_std_scale_var_dict",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    dendrogram=True,
                    standard_scale="var",
                    layer="test",
                    cmap="Blues_r",
                    title='scale var, custom colorbar_title, layer="test"',
                    colorbar_title="Scaled expression",
                ),
            ),
            (
                "matrixplot_std_scale_group",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    standard_scale="group",
                    title="scale_group, swap_axes",
                    swap_axes=True,
                ),
            ),
            (
                "matrixplot2",
                partial(
                    sc.pl.matrixplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=4,
                    title="non-categorical obs, custom figsize",
                    figsize=(8, 2.5),
                    cmap="RdBu_r",
                ),
            ),
            (
                "stacked_violin",
                partial(
                    sc.pl.stacked_violin,
                    groupby="cell_type",
                    use_raw=False,
                    title="stacked_violin
Raw output 
/home/vsts/work/1/s/scanpy/tests/conftest.py:115: AssertionError: Image files did not match.

Check failure on line 1 in scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot_std_scale_group-fn3]

See this annotation in the file changed.

@azure-pipelines azure-pipelines / scverse.scanpy

scanpy/tests/test_plotting.py::test_dotplot_matrixplot_stacked_violin[dotplot_std_scale_group-fn3] 

image_comparer = <function image_comparer.<locals>.save_and_compare at 0x7f8bb0a76e80>
id = 'dotplot_std_scale_group'
fn = functools.partial(<function dotplot at 0x7f8bc828fc40>, groupby='cell_type', use_raw=False, dendrogram=True, layer='test', swap_axes=True, title='swap_axes, layer=-1*X, scale=group\nsmallest_dot=10', standard_scale='group', smallest_dot=10)

    @pytest.mark.parametrize(
        "id,fn",
        [
            (
                "dotplot",
                partial(
                    sc.pl.dotplot, groupby="cell_type", title="dotplot", dendrogram=True
                ),
            ),
            (
                "dotplot2",
                partial(
                    sc.pl.dotplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=7,
                    title="non categorical obs",
                    figsize=(7, 2.5),
                ),
            ),
            (
                "dotplot3",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    cmap="hot_r",
                    title="dot_max=0.7 dot_min=0.1, var_groups",
                    var_group_positions=[(0, 1), (9, 10)],
                    var_group_labels=["A", "B"],
                    dendrogram=True,
                ),
            ),
            (
                "dotplot_std_scale_group",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    use_raw=False,
                    dendrogram=True,
                    layer="test",
                    swap_axes=True,
                    title="swap_axes, layer=-1*X, scale=group\nsmallest_dot=10",
                    standard_scale="group",
                    smallest_dot=10,
                ),
            ),
            (
                "dotplot_dict",
                partial(
                    sc.pl.dotplot,
                    groupby="cell_type",
                    dot_max=0.7,
                    dot_min=0.1,
                    color_map="winter",
                    title="var as dict",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    title="matrixplot",
                    dendrogram=True,
                ),
            ),
            (
                "matrixplot_std_scale_var_dict",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    dendrogram=True,
                    standard_scale="var",
                    layer="test",
                    cmap="Blues_r",
                    title='scale var, custom colorbar_title, layer="test"',
                    colorbar_title="Scaled expression",
                ),
            ),
            (
                "matrixplot_std_scale_group",
                partial(
                    sc.pl.matrixplot,
                    groupby="cell_type",
                    use_raw=False,
                    standard_scale="group",
                    title="scale_group, swap_axes",
                    swap_axes=True,
                ),
            ),
            (
                "matrixplot2",
                partial(
                    sc.pl.matrixplot,
                    groupby="numeric_column",
                    use_raw=False,
                    num_categories=4,
                    title="non-categorical obs, custom figsize",
                    figsize=(8, 2.5),
                    cmap="RdBu_r",
                ),
            ),
            (
                "stacked_violin",
                partial(
                    sc.pl.stacked_violin,
                    groupb
Raw output 
/home/vsts/work/1/s/scanpy/tests/conftest.py:115: AssertionError: Image files did not match.
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