Release 0.0.1.0001

sbalci · Mar 14, 2020 · c57b17c · c57b17c
1 parent 92c7f60
commit c57b17c
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Showing 52 changed files with 1,077 additions and 363 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -33,12 +33,12 @@
 ^build/R/
 ^build/js/
 
-tododata
-data
-vignettes
-docs
-temp
-build
+^tododata/
+^data/
+^vignettes/
+^docs/
+^temp/
+^build/
 ^.*\.jmo$
 
 ^tests$

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: ClinicoPath
 Type: Package
 Title: Analysis for Clinicopathological Research
-Version: 0.0.1
-Date: 2020-03-09
+Version: 0.0.1.0001
+Date: 2020-03-11
 Authors@R: 
     person(given = "Serdar",
            family = "Balci",
@@ -40,7 +40,9 @@ Imports:
     knitr,
     remotes,
     kableExtra,
-    ggstatsplot
+    ggstatsplot,
+    ggalluvial,
+    networkD3
 Remotes:
     easystats/modelbased,
     easystats/insight,
@@ -51,7 +53,8 @@ Remotes:
 Suggests:
     effectsize,
     emmeans,
-    rmarkdown
+    rmarkdown,
+    igraph
 RoxygenNote: 7.0.2
 VignetteBuilder: knitr
 URL: https://github.com/sbalci/ClinicoPathJamoviModule/, https://sbalci.github.io/ClinicoPathJamoviModule/ 

diff --git a/NAMESPACE b/NAMESPACE
@@ -1,15 +1,22 @@
 # Generated by roxygen2: do not edit by hand
 
 export(crosstable)
+export(multisurvival)
 export(reportcat)
+export(statsplot2)
 export(summarydata)
 export(survival)
 export(tableone)
 import(finalfit)
+import(ggalluvial)
+import(ggplot2)
+import(ggstatsplot)
 import(jmvcore)
+import(networkD3)
 import(survival)
 import(survminer)
 importFrom(R6,R6Class)
+importFrom(ggalluvial,StatStratum)
 importFrom(jmvcore,toNumeric)
 importFrom(purrr,map)
 importFrom(rlang,.data)

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,10 @@
+# ClinicoPath 0.0.1.0001
+
+Added multivariate survival, and comparison plots.
+
+
+
+
 # ClinicoPath v0.0.1
 
 

diff --git a/R/00jmv.R b/R/00jmv.R
@@ -220,4 +220,11 @@
         `year`=2019, 
         `title`="survminer: Drawing Survival Curves using 'ggplot2'", 
         `publisher`="[R package]. Retrieved from https://CRAN.R-project.org/package=survminer", 
-        `url`="https://CRAN.R-project.org/package=survminer"))
+        `url`="https://CRAN.R-project.org/package=survminer"), 
+    `ggalluvial`=list(
+        `type`="software", 
+        `author`="Jason Cory Brunson", 
+        `year`=2019, 
+        `title`="ggalluvial: Alluvial Plots in 'ggplot2'.", 
+        `publisher`="[R package]. Retrieved from https://CRAN.R-project.org/package=ggalluvial", 
+        `url`="https://CRAN.R-project.org/package=ggalluvial"))
diff --git a/tododata/multisurvival.b.R → R/multisurvival.b.R b/tododata/multisurvival.b.R → R/multisurvival.b.R
diff --git a/tododata/multisurvival.h.R → R/multisurvival.h.R b/tododata/multisurvival.h.R → R/multisurvival.h.R