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Add splitting BAM index to spec #321

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Add splitting BAM index to spec #321

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Commits on Jun 5, 2018

  1. Initial draft of a spec for splitting BAM index files, similar to 

    that used in Hadoop-BAM. A htsjdk implementation can be found in
samtools/htsjdk#1138.
    @tomwhite
    tomwhite committed Jun 5, 2018
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  2. Respond to feedback from John Marshall

    @tomwhite
    tomwhite committed Jun 5, 2018
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Commits on Jun 6, 2018

  1. Generalize to BGZF files. 

    Add fields for file length, number of records, start and end offsets, and number of offsets.
    @tomwhite
    tomwhite committed Jun 6, 2018
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Commits on Jun 7, 2018

  1. Remove first_offset and end_offset from the header, and clarify 

    the role of the final sentinel offset.
    @tomwhite
    tomwhite committed Jun 7, 2018
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Commits on Jun 11, 2018

  1. Add optional MD5 and UUID fields

    @tomwhite
    tomwhite committed Jun 11, 2018
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Commits on Jun 12, 2018

  1. Change granularity and n_offsets to be longs

    @tomwhite
    tomwhite committed Jun 12, 2018
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