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Change prioritization table and mushroom plot defaults #8

Change prioritization table and mushroom plot defaults

Change prioritization table and mushroom plot defaults #8

Triggered via pull request August 29, 2024 13:25
@csangaracsangara
synchronize #300
issue-297
Status Failure
Total duration 59m 5s
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check-standard.yaml

on: pull_request
Matrix: check-standard
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23 errors and 32 warnings
ubuntu-latest (oldrel-1)
Process completed with exit code 1.
macos-latest (release)
cannot open the connection to 'https://zenodo.org/record/3260758/files/hnscc_expression.rds'
macos-latest (release)
cannot open the connection to 'https://zenodo.org/record/4675430/files/seurat_obj_hnscc.rds'
macos-latest (release)
The total size of the 19 globals exported for future expression (‘FUN()’) is 2.81 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are ‘FUN’ (2.54 GiB of class ‘function’), ‘raw_umi’ (272.22 MiB of class ‘S4’) and ‘model_pars_fit’ (1.72 MiB of class ‘list’)
macos-latest (release)
there is no package called ‘DiagrammeRsvg’
macos-latest (release)
trying to use CRAN without setting a mirror
macos-latest (release)
Can't select columns that don't exist.
macos-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (release)
cannot read from connection
ubuntu-latest (release)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (release)
trying to use CRAN without setting a mirror
ubuntu-latest (release)
Can't select columns that don't exist.
ubuntu-latest (release)
there is no package called ‘nsga2R’
ubuntu-latest (devel)
cannot read from connection
ubuntu-latest (devel)
there is no package called ‘DiagrammeRsvg’
ubuntu-latest (devel)
trying to use CRAN without setting a mirror
ubuntu-latest (devel)
Can't select columns that don't exist.
ubuntu-latest (devel)
there is no package called ‘nsga2R’
windows-latest (release)
The total size of the 19 globals exported for future expression ('FUN()') is 2.81 GiB.. This exceeds the maximum allowed size of 500.00 MiB (option 'future.globals.maxSize'). The three largest globals are 'FUN' (2.54 GiB of class 'function'), 'raw_umi' (272.22 MiB of class 'S4') and 'model_pars_fit' (1.72 MiB of class 'list')
windows-latest (release)
there is no package called 'DiagrammeRsvg'
windows-latest (release)
trying to use CRAN without setting a mirror
windows-latest (release)
Can't select columns that don't exist.
windows-latest (release)
there is no package called 'nsga2R'
macos-latest (release)
'::' or ':::' imports not declared from:
macos-latest (release)
get_expressed_genes:
macos-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
macos-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
macos-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
macos-latest (release)
LazyData DB of 5.8 MB without LazyDataCompression set
macos-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
macos-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (release)
'::' or ':::' imports not declared from:
ubuntu-latest (release)
get_expressed_genes:
ubuntu-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (release)
Directory 'inst/doc' does not exist.
ubuntu-latest (devel)
'::' or ':::' imports not declared from:
ubuntu-latest (devel)
get_expressed_genes:
ubuntu-latest (devel)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
ubuntu-latest (devel)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
ubuntu-latest (devel)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
ubuntu-latest (devel)
LazyData DB of 5.5 MB without LazyDataCompression set
ubuntu-latest (devel)
Files in the 'vignettes' directory but no files in 'inst/doc':
ubuntu-latest (devel)
Directory 'inst/doc' does not exist.
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
get_expressed_genes:
windows-latest (release)
Missing link or links in Rd file 'get_ligand_target_links_oi.Rd':
windows-latest (release)
Functions or methods with usage in Rd file 'get_optimized_parameters_nsga2r.Rd' but not in code:
windows-latest (release)
Documented arguments not in \usage in Rd file 'get_lfc_celltype.Rd':
windows-latest (release)
LazyData DB of 5.5 MB without LazyDataCompression set
windows-latest (release)
Files in the 'vignettes' directory but no files in 'inst/doc':
windows-latest (release)
Directory 'inst/doc' does not exist.