Changed

the 7mer context for r9 to a 5mer context
- some data showed significant signals near a mutation that are within a 7mer context, but not a 5mer context - hard to say if from mutation or not (no proof). Therefore, stick to the number of nucleotides measured together depending on the pore-type.
MeanDiffAvgStdDev plots are now called MeDAS, meaning Mean Distance Average Standard-deviation
- MeDAS plots showing the coverage
- plots are now created using the magniplot.py
- before: created with magnipore.py
change part of logger file name created by the subscript nanocherlock.py from "magnipore" to "nanosherlock"
gzip will now overwrite already existing output files

Added

different ranges for the classification of a significant signal into mutation or potential modification depending on the pore type
- r9: 5mer context
- r10: 9mer context
magnifilter.py: a script to filter the given .magnipore output file for a given coverage threshold
magnicheck.py: a script to check if magnipore found the positions in a context of given validated ground truth positions
multiprocessing of magnipore model comparisons