Bump the minor_and_patch group across 1 directory with 4 updates

[dependabot]

Bumps the minor_and_patch group with 4 updates in the / directory: numpy, matplotlib, pylint and pytest.

Updates numpy from 2.1.3 to 2.2.0

Release notes

Sourced from numpy's releases.

2.2.0 (Dec 8, 2024)

NumPy 2.2.0 Release Notes

The NumPy 2.2.0 release is quick release that brings us back into sync with the usual twice yearly release cycle. There have been an number of small cleanups, as well as work bringing the new StringDType to completion and improving support for free threaded Python. Highlights are:

• New functions matvec and vecmat, see below.
• Many improved annotations.
• Improved support for the new StringDType.
• Improved support for free threaded Python
• Fixes for f2py

This release supports Python versions 3.10-3.13.

Deprecations

• _add_newdoc_ufunc is now deprecated. ufunc.__doc__ = newdoc should be used instead.

  (gh-27735)

Expired deprecations

• bool(np.array([])) and other empty arrays will now raise an error. Use arr.size > 0 instead to check whether an array has no elements.

  (gh-27160)

Compatibility notes

• numpy.cov now properly transposes single-row (2d array) design matrices when rowvar=False. Previously, single-row design matrices would return a scalar in this scenario, which is not correct, so this is a behavior change and an array of the appropriate shape will now be returned.

  (gh-27661)

New Features

• New functions for matrix-vector and vector-matrix products

  Two new generalized ufuncs were defined:

  • numpy.matvec - matrix-vector product, treating the arguments as stacks of matrices and column vectors,

... (truncated)

Commits

• e7a123b Merge pull request #27928 from charris/prepare-2.2.0
• d97d071 MAINT: Try fixing MacOS cirrus build failures. [wheel build]
• 1ed7b67 REL: Prepare for the NumPy 2.2.0 release [wheel build]
• fd9e7ef Merge pull request #27916 from charris/backport-27915
• 2e0941f MAINT: Bump actions/cache from 4.1.2 to 4.2.0
• 013656d Merge pull request #27912 from charris/backport-27877
• 7895ba6 Merge pull request #27913 from charris/backport-27896
• ee8d1cd PERF: improve multithreaded ufunc scaling (#27896)
• 77fff6b ENH: Refactor __qualname__ across API (#27877)
• b30a338 Merge pull request #27911 from charris/backport-27891
• Additional commits viewable in compare view

Updates matplotlib from 3.9.2 to 3.10.0

Release notes

Sourced from matplotlib's releases.

REL: v3.10.0

Highlights of this release include:

- Preliminary support for free-threaded CPython 3.13
- Standard getters/setters for axis inversion state
- New more-accessible color cycle
- Dark-mode diverging colormaps
- Exception handling control
- InsetIndicator artist
- FillBetweenPolyCollection
- Fill between 3D lines
- Data in 3D plots can now be dynamically clipped to the axes view limits
- Rotating 3d plots with the mouse
- Increased Figure limits with Agg renderer
- Subfigures no longer provisional
- Subfigures are now added in row-major order

Matplotlib v3.10.0rc1

This is the first release candidate for Matplotlib 3.10.0

REL: 3.9.4

This is the fourth bugfix release of the 3.9.x series.

This release contains two bug-fixes:

• Fix toolbar icons in GTK backend
• Fix Poly3DCollection initialization with list of lists

REL: 3.9.3

This is the third bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

• Fix axline with extremely small slopes
• Fix axline with non-linear axis scales
• Fix minimumSizeHint with Qt backend
• Fix config directory usage when it's behind a symlink
• Fix draggable legend when blitting is enabled
• Fix high CPU utilization in the macosx backend
• Fix multiple hatch edgecolors passed to contourf
• Improve compatibility with pytest 8.2.0

Commits

• 8d64f03 REL: v3.10.0 release
• d9dfee8 [doc] Fix dead links
• 87a603f Update release notes for 3.10.0
• cdecf97 Update github stats for 3.10
• b8d19bd Merge pull request #29306 from meeseeksmachine/auto-backport-of-pr-29242-on-v...
• a42d0ed Backport PR #29242: DOC: Add kwdoc list to scatter() docstring
• 1900640 Merge pull request #29299 from QuLogic/merge-v39x
• 815389c Merge branch 'v3.9.x' into v3.10.x
• 73873c0 DOC: Create release notes for 3.9.4
• 9d17a2b DOC: Add Zenodo DOI for 3.9.4
• Additional commits viewable in compare view

Updates pylint from 3.3.1 to 3.3.2

Commits

• a5a1bc3 Bump pylint to 3.3.2, update changelog (#10088)
• 621ecf6 Fix potential-index-error false positive when iterable contains starred ele...
• 5597aae Fix source root not recognized (#10036) (#10083)
• ea8ed7e Bump astroid to 3.3.5 (#10004) (#10005)
• ec4ca64 Fix release note typo (#9969) (#9971)
• See full diff in compare view

Updates pytest from 8.3.3 to 8.3.4

Release notes

Sourced from pytest's releases.

8.3.4

pytest 8.3.4 (2024-12-01)

Bug fixes

• #12592: Fixed KeyError{.interpreted-text role="class"} crash when using --import-mode=importlib in a directory layout where a directory contains a child directory with the same name.

• #12818: Assertion rewriting now preserves the source ranges of the original instructions, making it play well with tools that deal with the AST, like executing.

• #12849: ANSI escape codes for colored output now handled correctly in pytest.fail{.interpreted-text role="func"} with [pytrace=False]{.title-ref}.

• #9353: pytest.approx{.interpreted-text role="func"} now uses strict equality when given booleans.

Improved documentation

• #10558: Fix ambiguous docstring of pytest.Config.getoption{.interpreted-text role="func"}.

• #10829: Improve documentation on the current handling of the --basetemp option and its lack of retention functionality (temporary directory location and retention{.interpreted-text role="ref"}).

• #12866: Improved cross-references concerning the recwarn{.interpreted-text role="fixture"} fixture.

• #12966: Clarify filterwarnings{.interpreted-text role="ref"} docs on filter precedence/order when using multiple @pytest.mark.filterwarnings <pytest.mark.filterwarnings ref>{.interpreted-text role="ref"} marks.

Contributor-facing changes

• #12497: Fixed two failing pdb-related tests on Python 3.13.

Commits

• 53f8b4e Update pypa/gh-action-pypi-publish to v1.12.2
• 98dff36 Prepare release version 8.3.4
• 1b474e2 approx: use exact comparison for bool (#13013)
• b541721 docs: Fix wrong statement about sys.modules with importlib import mode (#1298...
• 16cb87b pytest.fail: fix ANSI escape codes for colored output (#12959) (#12990)
• be6bc81 Issue #12966 Clarify filterwarnings docs on precedence when using multiple ma...
• 7aeb72b Improve docs on basetemp and retention (#12912) (#12928)
• c875841 Merge pull request #12917 from pytest-dev/patchback/backports/8.3.x/ded1f44e5...
• 6502816 Merge pull request #12913 from jakkdl/dontfailonbadpath
• 52135b0 Merge pull request #12885 from The-Compiler/pdb-py311 (#12887)
• Additional commits viewable in compare view

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[dependabot]

Looks like these dependencies are updatable in another way, so this is no longer needed.