updating docs/links (#27)

* updating docs/links * bumping version
richard-burhans · Aug 30, 2024 · 646cb39 · 646cb39
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diff --git a/tools/batched_lastz/.shed.yml b/tools/batched_lastz/.shed.yml
@@ -1,7 +1,7 @@
 categories:
 - Next Gen Mappers
 description: Galaxy wrapper for the batching Lastz runs
-homepage_url: https://github.com/gsneha26/SegAlign
+homepage_url: https://github.com/galaxyproject/KegAlign
 long_description: |
   LASTZ is designed to preprocess one sequence or set of sequences
   (which we collectively call the TARGET) and then align several

diff --git a/tools/batched_lastz/batched_lastz.xml b/tools/batched_lastz/batched_lastz.xml
@@ -26,17 +26,17 @@
       </test>
     </tests>
     <help><![CDATA[
-Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's SegAlign tool. It outputs pairiwse alignments in a verietry of formats.
+Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's KegAlign tool. It outputs pairiwse alignments in a verietry of formats.
 
 **Using this tool**
 
 .. class:: warningmark
 
-This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of SegAlign tool.
+This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of KegAlign tool.
 
 **What it does**
 
-SegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. 
+KegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. 
 
 The default output is a MAF alignment file. Other formats can be configured in *Output Options* section.  See LASTZ manual <https://lastz.github.io/lastz/#formats>`_ for description of possible formats.
     ]]></help>

diff --git a/tools/batched_lastz/macros.xml b/tools/batched_lastz/macros.xml
@@ -6,7 +6,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">1.04.22</token>
-    <token name="@VERSION_SUFFIX@">3</token>
+    <token name="@VERSION_SUFFIX@">4</token>
     <token name="@PROFILE@">21.05</token>
     <xml name="citations">
         <citations>