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Stegen #44

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merged 61 commits into from
Nov 9, 2018
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d45b65f
adding template pratical stegen based o intro
thibautjombart Oct 24, 2018
c9840ee
removed a lot of stuff, kept the intro
thibautjombart Oct 25, 2018
0675d2f
working on stegen, up to data cleaning
thibautjombart Oct 25, 2018
0c56fb0
resaved data using Excel; data input sorted
thibautjombart Oct 25, 2018
2af5f2e
adding ggplot2 graphics
thibautjombart Oct 25, 2018
40aec5e
better optional content
thibautjombart Oct 25, 2018
5f67b3a
added epicurves
thibautjombart Oct 25, 2018
343177d
added epicurve stratification
thibautjombart Oct 25, 2018
334b187
adding t test and bartlett
thibautjombart Oct 25, 2018
2ced11c
adding chi2 test
thibautjombart Oct 25, 2018
1d35269
first complete version of stegen
thibautjombart Oct 25, 2018
6b3046c
adding stegen practical post - md and files
thibautjombart Oct 25, 2018
66a6e2a
Add vertical space to button html
zkamvar Oct 26, 2018
a4d8840
change div to details
zkamvar Oct 26, 2018
cb2e32e
change h4 to bold
zkamvar Oct 26, 2018
e57ab0c
add more details tags
zkamvar Oct 26, 2018
8ec06b0
add more describe tags
zkamvar Oct 26, 2018
dc1d64e
use gfm instead of markdown_github
zkamvar Oct 26, 2018
b1fb96b
render test file to see if #45 works
zkamvar Oct 26, 2018
935d2e7
Attempt to fix deploy issue
zkamvar Oct 26, 2018
95ab91f
test re-adding buttons
zkamvar Oct 26, 2018
f43780f
attempt to resolve markdown not being recognised
zkamvar Oct 26, 2018
60f8871
:fire: markdown :fire:
zkamvar Oct 26, 2018
9314ac1
adding support for collapse button to head
thibautjombart Oct 26, 2018
5f05b32
adding test files for buttons
thibautjombart Oct 26, 2018
dd09c4a
adding comments
thibautjombart Oct 26, 2018
bc02196
place bootstrap above mathjax
zkamvar Oct 26, 2018
d266fc1
Add figures for stegen practical
zkamvar Oct 26, 2018
0857abb
Merge branch 'master' into stegen
zkamvar Oct 29, 2018
4a079ee
add case studies as a menu item
zkamvar Oct 29, 2018
60c90c1
remove bootstrap headers (sorry, Teebz :disappointed:)
zkamvar Oct 29, 2018
4f1f20f
add color and background to details tags
zkamvar Oct 29, 2018
fb12959
update practical to use details tags and move imgs to right dir
zkamvar Oct 29, 2018
3e8dc75
minor changes to appearance
zkamvar Oct 30, 2018
d3c4e4b
fix plots in practical
zkamvar Oct 30, 2018
927081e
add link to source data file
zkamvar Oct 31, 2018
8a3973d
add small data writing section
zkamvar Oct 31, 2018
e76fa94
removed figs that don't matter
zkamvar Oct 31, 2018
c04e8b3
Added to narative, included static image of outbreak area, included n…
AmmerB Nov 1, 2018
66fefed
Fixed typos
AmmerB Nov 1, 2018
45d1997
added tag "plotting cases"
AmmerB Nov 1, 2018
be51a9d
modified stat section to show confidence interval
zkamvar Nov 2, 2018
61ac7b7
update learn package for diff pandoc
zkamvar Nov 5, 2018
77e8d12
attempt to use embedded map of stegen
zkamvar Nov 5, 2018
51643de
add widget
zkamvar Nov 5, 2018
b4fd9c9
add ggmap
zkamvar Nov 5, 2018
df44290
clean up document
zkamvar Nov 5, 2018
a5d11ef
minor changes
AmmerB Nov 6, 2018
f4c785f
start on changes to using sf
zkamvar Nov 6, 2018
1e85ff5
Merge branch 'stegen' of github.com:reconhub/learn into stegen
zkamvar Nov 6, 2018
8b26934
update with spatial silliness
zkamvar Nov 6, 2018
2b2d6ac
fix stupid echo thing
zkamvar Nov 6, 2018
d618607
fix a couple of things in the stegen practical
zkamvar Nov 7, 2018
c49bfc9
update main plot with proper labels
zkamvar Nov 7, 2018
0259b42
remove warning
zkamvar Nov 7, 2018
2ec8752
add saving RDS files; add Amrish
zkamvar Nov 7, 2018
526ef26
friggen echo options
zkamvar Nov 7, 2018
c525cff
update stegen practical to use readr
zkamvar Nov 9, 2018
899afce
remove test-buttons from my site
zkamvar Nov 9, 2018
a21033e
add zipped data files
zkamvar Nov 9, 2018
9a4019d
add instructions for project setup
zkamvar Nov 9, 2018
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2 changes: 1 addition & 1 deletion R/render_new_rmds_to_md.R
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@ render_new_rmds_to_md <- function(dir = "content/post",
for (b in to_build) {
rmd <- b
rmarkdown::render(rmd,
rmarkdown::md_document(variant = "markdown_github",
rmarkdown::md_document(variant = "gfm",
preserve_yaml = TRUE ))
}
}else{
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6 changes: 6 additions & 0 deletions config.toml
Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,12 @@ pygmentsCodeFences = true
weight = 99
pre = "<i class='far fa-align-justify'></i>"

[[menu.main]]
name = "Case Studies"
url = "/categories/case-studies.html"
weight = 99
pre = "<i class='far fa-align-justify'></i>"

[[menu.main]]
name = "Lectures"
url = "/categories/lectures.html"
Expand Down
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