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@raufs raufs released this 02 Jul 22:24
· 51 commits to main since this release
v1.2.0
7d64c8a
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Learn about vigilant mode.
  • Introduce CiDDER - a CD-HIT based dereplication program to ensure you properly sample the pangenome space of a species/genus.
  • Introduce new option to skDER to test a bunch of cutoffs for ANI and AF and generate a heatmap on the number of representative genomes that results from different combinations. E.g. useful if you want to limit your analysis to X genomes but don't know what ANI/AF cutoffs to use.

Full Changelog: v1.1.1...v1.2.0

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