Merge master into sshash_module_superkmer_anno #498
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Declaration in DeBruijnGraph seems redundant
* Fix CI failures for MacOS * update simde-no-tests * Switch to latest compiling simde-no-tests * replace restrict_to_mask_epi64 with fully scalar verison * Update CMakeLists.txt --------- Co-authored-by: Harun Mustafa <[email protected]>
Update spdlog, add missing include, etc
* install libdeflate-dev * Link against libdeflate
* remove redundant implementations * use our impl of sshash, slight refactor * add sshash_sequences empty folder to git for CI * move DeBruijnGraph::operator== to parent * allow the number of chars to be specified beforehand * added stop_early to call_kmers. replace bad_function_call throws with a custom exception * Add generic implementation of adjacent_*_nodes * Put early_term in sequence_graph, silence sshash with rdbuf swap --------- Co-authored-by: Oleksandr Kulkov <[email protected]> Co-authored-by: Harun Mustafa <[email protected]> Co-authored-by: Harun Mustafa <[email protected]> Co-authored-by: Oleksandr Kulkov <[email protected]>
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PR for tracking.