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| Original file line number | Diff line number | Diff line change |
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| # ---------------------------------------------------------------------------- | ||
| # Copyright (c) 2016-2025, QIIME 2 development team. | ||
| # | ||
| # Distributed under the terms of the Modified BSD License. | ||
| # | ||
| # The full license is in the file LICENSE, distributed with this software. | ||
| # ---------------------------------------------------------------------------- | ||
|
|
||
| # flake8: noqa | ||
|
|
||
| MAP_2025 = { | ||
| # NOTE: UPDATE PYTHON VERSION IF WE BUMP TO 3.11 | ||
| # 2025.4 DISTROS | ||
| # Amplicon | ||
| 'distro/amplicon/qiime2-amplicon-2025.4-py310-osx-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/amplicon/released/qiime2-amplicon-macos-latest-conda.yml', | ||
| 'distro/amplicon/qiime2-amplicon-2025.4-py310-linux-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/amplicon/released/qiime2-amplicon-ubuntu-latest-conda.yml', | ||
| # Metagenome | ||
| 'distro/metagenome/qiime2-metagenome-2025.4-py310-osx-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/metagenome/released/qiime2-metagenome-macos-latest-conda.yml', | ||
| 'distro/metagenome/qiime2-metagenome-2025.4-py310-linux-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/metagenome/released/qiime2-metagenome-ubuntu-latest-conda.yml', | ||
| # Pathogenome | ||
| 'distro/pathogenome/qiime2-pathogenome-2025.4-py310-osx-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/pathogenome/released/qiime2-pathogenome-macos-latest-conda.yml', | ||
| 'distro/pathogenome/qiime2-pathogenome-2025.4-py310-linux-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/pathogenome/released/qiime2-pathogenome-ubuntu-latest-conda.yml', | ||
| # Tiny | ||
| 'distro/tiny/qiime2-tiny-2025.4-py310-osx-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/tiny/released/qiime2-tiny-macos-latest-conda.yml', | ||
| 'distro/tiny/qiime2-tiny-2025.4-py310-linux-conda.yml': | ||
| 'https://raw.githubusercontent.com/qiime2/distributions/dev/2025.4/tiny/released/qiime2-tiny-ubuntu-latest-conda.yml', | ||
|
|
||
| # 2025.4 | ||
|
|
||
| '2025.4/tutorials/atacama-soils/10p/barcodes.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/10p/barcodes.fastq.gz', | ||
| '2025.4/tutorials/atacama-soils/10p/forward.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/10p/forward.fastq.gz', | ||
| '2025.4/tutorials/atacama-soils/10p/reverse.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/10p/reverse.fastq.gz', | ||
| '2025.4/tutorials/atacama-soils/1p/barcodes.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/1p/barcodes.fastq.gz', | ||
| '2025.4/tutorials/atacama-soils/1p/forward.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/1p/forward.fastq.gz', | ||
| '2025.4/tutorials/atacama-soils/1p/reverse.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/atacama-soils/1p/reverse.fastq.gz', | ||
| '2025.4/tutorials/chimera/atacama-table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/chimera/atacama-table.qza', | ||
| '2025.4/tutorials/chimera/atacama-rep-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/chimera/atacama-rep-seqs.qza', | ||
| '2025.4/tutorials/exporting/feature-table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/exporting/feature-table.qza', | ||
| '2025.4/tutorials/exporting/unrooted-tree.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/exporting/unrooted-tree.qza', | ||
| '2025.4/tutorials/filtering/distance-matrix.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/filtering/distance-matrix.qza', | ||
| '2025.4/tutorials/filtering/table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/filtering/table.qza', | ||
| '2025.4/tutorials/filtering/taxonomy.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/filtering/taxonomy.qza', | ||
| '2025.4/tutorials/filtering/sequences.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/filtering/sequences.qza', | ||
| '2025.4/tutorials/fmt/fmt-tutorial-demux-1-10p.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/fmt/fmt-tutorial-demux-1-10p.qza', | ||
| '2025.4/tutorials/fmt/fmt-tutorial-demux-1-1p.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/fmt/fmt-tutorial-demux-1-1p.qza', | ||
| '2025.4/tutorials/fmt/fmt-tutorial-demux-2-10p.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/fmt/fmt-tutorial-demux-2-10p.qza', | ||
| '2025.4/tutorials/fmt/fmt-tutorial-demux-2-1p.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/fmt/fmt-tutorial-demux-2-1p.qza', | ||
| '2025.4/tutorials/fmt-cdiff-khanna/manifest.csv': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/fmt-cdiff-khanna/manifest.csv', | ||
| '2025.4/tutorials/fmt-cdiff-khanna/sequence_files.zip': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/fmt-cdiff-khanna/sequence_files.zip', | ||
| '2025.4/tutorials/gneiss/sample-metadata.tsv': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/gneiss/sample-metadata.tsv', | ||
| '2025.4/tutorials/gneiss/table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/gneiss/table.qza', | ||
| '2025.4/tutorials/gneiss/taxa.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/gneiss/taxa.qza', | ||
| '2025.4/tutorials/importing/aligned-sequences.fna': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/aligned-sequences.fna', | ||
| '2025.4/tutorials/importing/casava-18-paired-end-demultiplexed.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/casava-18-paired-end-demultiplexed.zip', | ||
| '2025.4/tutorials/importing/casava-18-single-end-demultiplexed.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/casava-18-single-end-demultiplexed.zip', | ||
| '2025.4/tutorials/importing/feature-table-v100.biom': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/feature-table-v100.biom', | ||
| '2025.4/tutorials/importing/feature-table-v210.biom': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/feature-table-v210.biom', | ||
| '2025.4/tutorials/importing/muxed-se-barcode-in-seq.fastq.gz': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/importing/muxed-se-barcode-in-seq.fastq.gz', | ||
| '2025.4/tutorials/importing/pe-64-manifest': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/pe-64-manifest', | ||
| '2025.4/tutorials/importing/pe-64.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/pe-64.zip', | ||
| '2025.4/tutorials/importing/se-33-manifest': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/se-33-manifest', | ||
| '2025.4/tutorials/importing/se-33.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/se-33.zip', | ||
| '2025.4/tutorials/importing/sequences.fna': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/sequences.fna', | ||
| '2025.4/tutorials/importing/unrooted-tree.tre': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/unrooted-tree.tre', | ||
| '2025.4/tutorials/importing/muxed-pe-barcode-in-seq/forward.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/muxed-pe-barcode-in-seq/forward.fastq.gz', | ||
| '2025.4/tutorials/importing/muxed-pe-barcode-in-seq/reverse.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/importing/muxed-pe-barcode-in-seq/reverse.fastq.gz', | ||
| '2025.4/tutorials/longitudinal/ecam_table_taxa.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/longitudinal/ecam_table_taxa.qza', | ||
| '2025.4/tutorials/longitudinal/ecam_shannon.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/longitudinal/ecam_shannon.qza', | ||
| '2025.4/tutorials/longitudinal/unweighted_unifrac_distance_matrix.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/longitudinal/unweighted_unifrac_distance_matrix.qza', | ||
| '2025.4/tutorials/longitudinal/ecam_table_maturity.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/longitudinal/ecam_table_maturity.qza', | ||
| '2025.4/tutorials/moving-pictures/emp-single-end-sequences/barcodes.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/moving-pictures/emp-single-end-sequences/barcodes.fastq.gz', | ||
| '2025.4/tutorials/moving-pictures/emp-single-end-sequences/sequences.fastq.gz': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/moving-pictures/emp-single-end-sequences/sequences.fastq.gz', | ||
| '2025.4/tutorials/metadata/faith_pd_vector.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/metadata/faith_pd_vector.qza', | ||
| '2025.4/tutorials/metadata/rep-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/metadata/rep-seqs.qza', | ||
| '2025.4/tutorials/metadata/taxonomy.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/metadata/taxonomy.qza', | ||
| '2025.4/tutorials/metadata/unweighted_unifrac_pcoa_results.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/metadata/unweighted_unifrac_pcoa_results.qza', | ||
| '2025.4/tutorials/otu-clustering/seqs.fna': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/otu-clustering/seqs.fna', | ||
| '2025.4/tutorials/otu-clustering/85_otus.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/otu-clustering/85_otus.qza', | ||
| '2025.4/tutorials/pd-mice/animal_distal_gut.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/pd-mice/animal_distal_gut.qza', | ||
| '2025.4/tutorials/pd-mice/demultiplexed_seqs.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/pd-mice/demultiplexed_seqs.zip', | ||
| '2025.4/tutorials/pd-mice/manifest': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/pd-mice/manifest', | ||
| '2025.4/tutorials/pd-mice/ref_seqs_v4.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/pd-mice/ref_seqs_v4.qza', | ||
| '2025.4/tutorials/pd-mice/ref_tax.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/pd-mice/ref_tax.qza', | ||
| '2025.4/tutorials/quality-control/qc-mock-3-expected.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/quality-control/qc-mock-3-expected.qza', | ||
| '2025.4/tutorials/quality-control/qc-mock-3-observed.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/quality-control/qc-mock-3-observed.qza', | ||
| '2025.4/tutorials/quality-control/query-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/quality-control/query-seqs.qza', | ||
| '2025.4/tutorials/quality-control/reference-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/quality-control/reference-seqs.qza', | ||
| '2025.4/tutorials/quality-control/query-table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/quality-control/query-table.qza', | ||
| '2025.4/tutorials/read-joining/atacama-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/read-joining/atacama-seqs.qza', | ||
| '2025.4/tutorials/read-joining/fj-joined.zip': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/read-joining/fj-joined.zip', | ||
| '2025.4/tutorials/sample-classifier/atacama-table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/sample-classifier/atacama-table.qza', | ||
| '2025.4/tutorials/sample-classifier/moving-pictures-table.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/sample-classifier/moving-pictures-table.qza', | ||
| '2025.4/tutorials/training-feature-classifiers/85_otu_taxonomy.txt': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/training-feature-classifiers/85_otu_taxonomy.txt', | ||
| '2025.4/tutorials/training-feature-classifiers/85_otus.fasta': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/training-feature-classifiers/85_otus.fasta', | ||
| '2025.4/tutorials/training-feature-classifiers/rep-seqs.qza': | ||
| 'https://s3-us-west-2.amazonaws.com/qiime2-data/2025.4/tutorials/training-feature-classifiers/rep-seqs.qza', | ||
| '2025.4/tutorials/phylogeny/rep-seqs.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/phylogeny/rep-seqs.qza', | ||
| '2025.4/tutorials/utilities/faith-pd-vector.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/utilities/faith-pd-vector.qza', | ||
| '2025.4/tutorials/utilities/jaccard-pcoa.qza': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/utilities/jaccard-pcoa.qza', | ||
| '2025.4/tutorials/utilities/taxa-barplot.qzv': | ||
| 'https://qiime2-data.s3-us-west-2.amazonaws.com/2025.4/tutorials/utilities/taxa-barplot.qzv', | ||
| '2025.4/tutorials/liao/fmt-metadata.tsv': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/fmt-metadata.tsv', | ||
| '2025.4/tutorials/liao/sample-metadata.tsv': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/sample-metadata.tsv', | ||
| '2025.4/tutorials/liao/transplant-metadata.tsv': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/transplant-metadata.tsv', | ||
| '2025.4/tutorials/liao/rep-seqs.qza': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/rep-seqs.qza', | ||
| '2025.4/tutorials/liao/full-feature-table.qza': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/full-feature-table.qza', | ||
| '2025.4/tutorials/liao/fastq-casava.zip': | ||
| 'https://qiime2-data.s3.us-west-2.amazonaws.com/2025.4/tutorials/liao/fastq-casava.zip', | ||
|
|
||
| # Sample Metadata (hosted on Google Sheets) | ||
| ## All of the following tutorials use the *new* docs sharing menu, via "File -> Publish to the Web" dialog for TSV export. | ||
|
|
||
| ## FMT | ||
| '2025.4/tutorials/fmt/sample_metadata': | ||
| 'https://docs.google.com/spreadsheets/d/1UfHnTvsojIRozNlFLtKW-KBX7QIiKBf18jkaonjGjbE/edit?usp=sharing', | ||
| '2025.4/tutorials/fmt/sample_metadata.tsv': | ||
| 'https://docs.google.com/spreadsheets/d/e/2PACX-1vQKaiB4AEby0RdTftP8f1ilOSPhFf66X16CNRgyT4Z0rbSk4Epy4CC5BcUekjhCnr05haSbWxeGZf1P/pub?gid=0&single=true&output=tsv', | ||
|
|
||
| ## Moving Pictures | ||
| '2025.4/tutorials/moving-pictures/sample_metadata': | ||
| 'https://docs.google.com/spreadsheets/d/13OLfRy4bt3IiLdHXHkkfdMxaJXJ65mEjAxe1A01frBQ/edit?usp=sharing', | ||
| '2025.4/tutorials/moving-pictures/sample_metadata.tsv': | ||
| 'https://docs.google.com/spreadsheets/d/e/2PACX-1vSETdFG23WYy3u0MhEQRlw1gE2oQrAlPW2LKfETMXbdF4wH9ZXkpOau4cRWwTqm6vwap0ns8Pu5B8wN/pub?gid=0&single=true&output=tsv', | ||
|
|
||
| ## Atacama | ||
| '2025.4/tutorials/atacama-soils/sample_metadata': | ||
| 'https://docs.google.com/spreadsheets/d/1eQSLklA2OR1Vo0bS6EHz1Qq9NIuIa1ANhfn7Qek2dwg/edit?usp=sharing', | ||
| '2025.4/tutorials/atacama-soils/sample_metadata.tsv': | ||
| 'https://docs.google.com/spreadsheets/d/e/2PACX-1vQiT_TuZ-g2JC790DXFP9Fhkhti_vjNvJoqDzRscGoculfLBYl2VTAYkAOoHVhnYCLe86-xNnXU84tQ/pub?gid=0&single=true&output=tsv', | ||
|
|
||
| ## Longitudinal | ||
| '2025.4/tutorials/longitudinal/sample_metadata': | ||
| 'https://docs.google.com/spreadsheets/d/1EZVm7gfw0fzz4RNkx1TPiJjhpPLWE6VcAIpAB_JDhcg/edit?usp=sharing', | ||
| '2025.4/tutorials/longitudinal/sample_metadata.tsv': | ||
| 'https://docs.google.com/spreadsheets/d/e/2PACX-1vRJL3EmUTIIVqW_HU0eXFiOVIZ-n0S36mFLRHqpRZrFANsBC5Duga_DiGpxuRU1C-aq0gBL28zhDIY3/pub?gid=1303657428&single=true&output=tsv', | ||
|
|
||
| ## PD Mice | ||
| '2025.4/tutorials/pd-mice/sample_metadata': | ||
| 'https://docs.google.com/spreadsheets/d/1KW00pThfZy5Kce7L2tqnuN11dwqzMWec5G6_jTfT2JE/edit?usp=sharing', | ||
| '2025.4/tutorials/pd-mice/sample_metadata.tsv': | ||
| 'https://docs.google.com/spreadsheets/d/e/2PACX-1vSYXZbF5LZGfXvrWLVGfT5u3zj23fiAIsGDJd_DRzF0bTBBRmeQxjIBUdMruztI2M_HWP4STM4rDoH0/pub?gid=1509704122&single=true&output=tsv', | ||
| } |
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