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Genomic regions management.
qPCR4vir edited this page Nov 13, 2015
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1 revision
The columns here are:
| Column | Description |
|---|---|
| Region Name (B) | A name for each genomic region used. Using the drop box In cell A1 you can select one of these regions. This will automatically select all the sequences in sheet Seq-class that completely span the region (it will set TRUE in the column „Contain region“ of the sheet „Seq-class“). The row 2 of this column will allow you to check what you have really selected |
| Reference:Fig (C) | Some of the papers where the region have been used. Include possible figure number and tables to easily localize the information |
| beg, end and frame for MEGAlign | Enter the position of beginning and end of the region in the big alignment, counting the gaps. Enter the frame (1, 2, or 3 codon position of the first base in the region) if it is a coding region. The corresponding length will be shown next, in column nt. |
| beg, end and nt for Burma and wbGER27 strains | Will automatically show the positions corresponding to reference sequences Burma:M73218 and wbGER27:FJ705359 |
| beg, end for Burma | Enter the position of beginning and end of the region in the Burma:M73218 sequence. The corresponding length (nt) will be shown next. |
| beg, end for Burma and wbGER27 strains | Will automatically show the positions corresponding to reference sequences Burma:M73218 and wbGER27:FJ705359 |