Add batched calculation option to `energy_score_empirical` in order to reduce memory consumption #1345

Workflow file for this run

	name: CI

	on:
	push:
	branches: [dev, master]
	pull_request:
	branches: [dev, master]

	env:
	CXX: g++-9
	CC: gcc-9
	# See coveralls-python - Github Actions support:
	# https://github.com/TheKevJames/coveralls-python/blob/master/docs/usage/configuration.rst#github-actions-support
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	COVERALLS_SERVICE_NAME: github


	jobs:
	lint:
	runs-on: ubuntu-20.04
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	pip install ruff black mypy nbstripout nbformat
	- name: Lint
	run: \|
	make lint
	docs:
	runs-on: ubuntu-20.04
	needs: lint
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build graphviz
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install -r docs/requirements.txt
	pip freeze
	- name: Build docs and run doctest
	run: \|
	make docs
	make doctest
	tutorials-html:
	runs-on: ubuntu-20.04
	needs: lint
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build graphviz pandoc
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install -r docs/requirements.txt
	# requirements for tutorials (from .[dev])
	sudo apt-get install pandoc
	pip install nbformat
	pip install nbsphinx>=0.3.2
	pip install nbstripout
	pip install pypandoc
	pip install ninja
	pip freeze
	- name: Build HTML from tutorials
	run: \|
	SPHINXOPTS="-E" make tutorial
	unit:
	runs-on: ubuntu-20.04
	needs: docs
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install --upgrade coveralls
	pip freeze
	- name: Run unit tests
	run: \|
	pytest -vs --cov=pyro --cov-config .coveragerc --stage unit --durations 20
	- name: Submit to coveralls
	run: coveralls --service=github \|\| true
	env:
	COVERALLS_PARALLEL: true
	COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
	examples:
	runs-on: ubuntu-20.04
	needs: [docs, tutorials-html]
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Setup Graphviz
	uses: ts-graphviz/setup-graphviz@v1
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install --upgrade coveralls
	pip freeze
	- name: Run examples
	run: \|
	CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10
	grep -l smoke_test tutorial/source/*.ipynb \| xargs grep -L 'smoke_test = False' \
	\| CI=1 xargs pytest -vx --nbval-lax --current-env
	- name: Submit to coveralls
	run: coveralls --service=github \|\| true
	env:
	COVERALLS_PARALLEL: true
	COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
	integration_1:
	runs-on: ubuntu-20.04
	needs: docs
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install --upgrade coveralls
	pip freeze
	- name: Run integration test (batch 1)
	run: \|
	pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_1 --durations 10
	- name: Submit to coveralls
	run: coveralls --service=github \|\| true
	env:
	COVERALLS_PARALLEL: true
	COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
	integration_2:
	runs-on: ubuntu-20.04
	needs: docs
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install --upgrade coveralls
	pip freeze
	- name: Run integration test (batch 2)
	run: \|
	pytest -vs --cov=pyro --cov-config .coveragerc --stage integration_batch_2 --durations 10
	- name: Submit to coveralls
	run: coveralls --service=github \|\| true
	env:
	COVERALLS_PARALLEL: true
	COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
	funsor:
	runs-on: ubuntu-20.04
	needs: docs
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
	sudo apt-get update
	sudo apt-get install gcc-9 g++-9 ninja-build
	python -m pip install --upgrade pip wheel 'setuptools!=58.5.*,<60'
	# Keep track of pyro-api master branch
	pip install https://github.com/pyro-ppl/pyro-api/archive/master.zip
	pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
	pip install .[test]
	pip install -e .[funsor]
	pip install --upgrade coveralls
	pip freeze
	- name: Run funsor tests
	run: \|
	pytest -vs --cov=pyro --cov-config .coveragerc --stage funsor --durations 10
	CI=1 pytest -vs --cov=pyro --cov-config .coveragerc --stage test_examples --durations 10 -k funsor
	- name: Submit to coveralls
	run: coveralls --service=github \|\| true
	env:
	COVERALLS_PARALLEL: true
	COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
	finish:
	needs: [unit, examples, integration_1, integration_2, funsor]
	runs-on: ubuntu-20.04
	strategy:
	matrix:
	python-version: [3.8]
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Coveralls Finished
	run: \|
	pip install --upgrade coveralls
	coveralls --service=github --finish \|\| true

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Add batched calculation option to `energy_score_empirical` in order to reduce memory consumption #1345

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Add batched calculation option to `energy_score_empirical` in order to reduce memory consumption #1345

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Workflow file for this run

Add batched calculation option to energy_score_empirical in order to reduce memory consumption #1345

Workflow file

Workflow file for this run

Add batched calculation option to `energy_score_empirical` in order to reduce memory consumption #1345