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It's now difficult to get pfam full alignments #1859

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jamesmkrieger opened this issue Apr 8, 2024 · 0 comments
Open

It's now difficult to get pfam full alignments #1859

jamesmkrieger opened this issue Apr 8, 2024 · 0 comments

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@jamesmkrieger
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Only seed alignments are available together with the families. To access full alignments, we need to download the a big gz file containing all of them together from the full release from ftp e.g. https://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam37.0/ and query it.

For now, I have made seed the default in #1858, but we will also need new code similar to what we have for pdb clusters.

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