v3.1.8 - Improved biomarkers report consistency
This release includes small but important convenience fixes such as fix to #152 issue where in cases when there are absolutely no plasmid biomarkers (i.e. empty biomarkers report) mob_typer
would fail. Additionally, this release improves marker reporting consistency between biomarkers and the main plasmid typing reports generated by mob_recon and mob_typer. The biomarkers report introduced since v3.1.7 lists the main plasmid biomarkers and their coordinates. Finally, plasmid databases were cleaned, synced and redundant files removed. A new databases archive url was updated and now points to https://zenodo.org/records/10304948/files/data.tar.gz?download=1
- Fixed permanently issue #152 and added a unit test
test_mob_recon_no_plasmid_biomarkers()
- Updated the core database archive
data.tar.gz
: a) removed redundanthost_range_ncbirefseq_plasmidDB.txt
andhost_range_ncbirefseq_plasmidDB.csv
; b) updatedclusters.txt
with newmob_typer
biomarker results for consistency (the cluster codes and number of records did not change) - Improved biomarkers report consistency with other reports by making sure that all markers listed in the
mob_typer
report are present in the biomarkers report. Implemented a new unit tests listed intest_databases_consistency.py