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--longreads option added for FASTQ long reads inputs such as PacBio, … Python application #29: Commit f1f6707 pushed by kbessonov1984
November 7, 2024 23:07 5m 11s v2.0.0
v2.0.0
November 7, 2024 23:07 5m 11s
--longreads option added for FASTQ long reads inputs such as PacBio, … Python application #28: Commit ea75384 pushed by kbessonov1984
November 7, 2024 23:06 5m 22s v2.0.0
v2.0.0
November 7, 2024 23:06 5m 22s
--longreads option added for FASTQ long reads inputs such as PacBio, … Python application #27: Commit 3963d92 pushed by kbessonov1984
November 7, 2024 23:04 5m 50s v2.0.0
v2.0.0
November 7, 2024 23:04 5m 50s
sorted for O mixed antigen is working Python application #26: Commit 6e38b40 pushed by kbessonov1984
November 7, 2024 22:15 5m 10s v2.0.0
v2.0.0
November 7, 2024 22:15 5m 10s
Updated bowtie2 setting to be compatible with long reads Python application #25: Commit c203a3b pushed by kbessonov1984
November 7, 2024 21:30 5m 25s v2.0.0
v2.0.0
November 7, 2024 21:30 5m 25s
added Shigella_sonnei test sample Python application #24: Commit ee4db4e pushed by kbessonov1984
October 28, 2024 19:33 5m 58s v2.0.0
v2.0.0
October 28, 2024 19:33 5m 58s
added new species ID fields that provide info on species hashes to re… Python application #23: Commit b2c7c5c pushed by kbessonov1984
October 28, 2024 19:26 5m 17s v2.0.0
v2.0.0
October 28, 2024 19:26 5m 17s
Added test of no directory specified and testing for multiple files i… Python application #22: Commit 7481376 pushed by kbessonov1984
October 3, 2024 21:04 5m 34s v2.0.0
v2.0.0
October 3, 2024 21:04 5m 34s
Updated pathotyping and toxin typing database by adding protein seque… Python application #21: Commit 02bc7c7 pushed by kbessonov1984
October 3, 2024 17:10 10m 4s v2.0.0
v2.0.0
October 3, 2024 17:10 10m 4s
Updated pathotyping and toxin typing database by adding protein seque… Python application #20: Commit 776c2fb pushed by kbessonov1984
October 3, 2024 17:00 4m 58s v2.0.0
v2.0.0
October 3, 2024 17:00 4m 58s
updated stx database STX subunit A and B sequences. Only kept STX com… Python application #19: Commit b420a54 pushed by kbessonov1984
September 20, 2024 17:19 4m 50s v2.0.0
v2.0.0
September 20, 2024 17:19 4m 50s
Updated documentation on Shiga toxin and pathotyping, also fixed bug … Python application #18: Commit 5f2c847 pushed by kbessonov1984
September 18, 2024 21:04 5m 12s v2.0.0
v2.0.0
September 18, 2024 21:04 5m 12s
Updated README.md with species ID module description Python application #17: Commit fe0de54 pushed by kbessonov1984
September 18, 2024 16:13 4m 51s v2.0.0
v2.0.0
September 18, 2024 16:13 4m 51s
Updated README.md to follow DAAD format and also updated url to Speci… Python application #16: Commit 1d3ba78 pushed by kbessonov1984
September 12, 2024 20:16 4m 54s v2.0.0
v2.0.0
September 12, 2024 20:16 4m 54s
Fixed bugs related to batch mode output files displaying only last sa… Python application #15: Commit d70a025 pushed by kbessonov1984
August 1, 2024 15:48 4m 42s v2.0.0
v2.0.0
August 1, 2024 15:48 4m 42s
Fixed bugs related to batch mode output files displaying only last sa… Python application #14: Commit 5d2da4d pushed by kbessonov1984
August 1, 2024 15:36 4m 44s v2.0.0
v2.0.0
August 1, 2024 15:36 4m 44s
fixed pytest issues Python application #13: Commit 8002091 pushed by kbessonov1984
July 31, 2024 02:57 4m 27s v2.0.0
v2.0.0
July 31, 2024 02:57 4m 27s
fixed batch mode error when one of the files fails FASTA test causing… Python application #12: Commit 41a5093 pushed by kbessonov1984
July 31, 2024 02:25 4m 56s v2.0.0
v2.0.0
July 31, 2024 02:25 4m 56s
Fixing small pytest errors Python application #11: Commit 6cca035 pushed by kbessonov1984
July 30, 2024 19:06 3m 41s v2.0.0
v2.0.0
July 30, 2024 19:06 3m 41s
Fixed pytest small error with test_emtpy_BLAST_antigen_hits Python application #10: Commit 4ef8526 pushed by kbessonov1984
July 30, 2024 18:50 5m 4s v2.0.0
v2.0.0
July 30, 2024 18:50 5m 4s
Making tool and its module more robust to errors Python application #9: Commit 22b6a98 pushed by kbessonov1984
July 30, 2024 18:26 5m 26s v2.0.0
v2.0.0
July 30, 2024 18:26 5m 26s
added wildcard characters in path specification and also multiple dir… Python application #8: Commit 74edb81 pushed by kbessonov1984
July 29, 2024 20:49 5m 46s v2.0.0
v2.0.0
July 29, 2024 20:49 5m 46s
fixed multiprocess Pool freeze on subprocess error and added better m… Python application #7: Commit f8cd859 pushed by kbessonov1984
July 29, 2024 17:21 4m 17s v2.0.0
v2.0.0
July 29, 2024 17:21 4m 17s
Added STEC O157:H7 GCA_000181775.1 gzip compressed for testing Python application #6: Commit 58b956e pushed by kbessonov1984
July 22, 2024 20:54 3m 35s v2.0.0
v2.0.0
July 22, 2024 20:54 3m 35s
github actions pytest CI feature added Python application #5: Commit 33eac5d pushed by kbessonov1984
July 22, 2024 17:35 3m 33s v2.0.0
v2.0.0
July 22, 2024 17:35 3m 33s