fix tool filter

paulzierep · Jul 18, 2024 · 68f8311 · 68f8311
1 parent 3096f46
commit 68f8311
Showing 1 changed file with 12 additions and 5 deletions.
diff --git a/bin/extract_galaxy_tools.py b/bin/extract_galaxy_tools.py
@@ -761,9 +761,16 @@ def get_tools(repo_list: list, edam_ontology: dict) -> List[Dict]:
 
         # filter tool lists
         ts_filtered_tools, filtered_tools = filter_tools(tools, categories, status)
-        export_tools_to_tsv(ts_filtered_tools, args.ts_filtered, format_list_col=True)
-        # if there are no filtered tools return the ts filtered tools
-        if filtered_tools:
-            export_tools_to_tsv(filtered_tools, args.filtered, format_list_col=True)
+
+        if ts_filtered_tools:
+
+            export_tools_to_tsv(ts_filtered_tools, args.ts_filtered, format_list_col=True)
+            # if there are no filtered tools return the ts filtered tools
+            if filtered_tools:
+                export_tools_to_tsv(filtered_tools, args.filtered, format_list_col=True)
+            else:
+                export_tools_to_tsv(ts_filtered_tools, args.filtered, format_list_col=True)
+
         else:
-            export_tools_to_tsv(ts_filtered_tools, args.filtered, format_list_col=True)
+            # if there are no ts filtered tools
+            print(f"No tools found for category {args.filtered}")