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paulzierep committed Nov 8, 2024
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99 changes: 1 addition & 98 deletions communities/microgalaxy/lab/sections/5_tools.yml
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- title_md: structure
description_md: for using multi-locus genotype data to investigate population
structure.
- title_md: suite_qiime2__alignment
description_md: .nan
- title_md: suite_qiime2__composition
description_md: .nan
- title_md: suite_qiime2__cutadapt
description_md: .nan
- title_md: suite_qiime2__dada2
description_md: .nan
- title_md: suite_qiime2__deblur
description_md: .nan
- title_md: suite_qiime2__demux
description_md: .nan
- title_md: suite_qiime2__diversity
description_md: .nan
- title_md: suite_qiime2__diversity_lib
description_md: .nan
- title_md: suite_qiime2__emperor
description_md: .nan
- title_md: suite_qiime2__feature_classifier
description_md: .nan
- title_md: suite_qiime2__feature_table
description_md: .nan
- title_md: suite_qiime2__fragment_insertion
description_md: .nan
- title_md: suite_qiime2__longitudinal
description_md: .nan
- title_md: suite_qiime2__metadata
description_md: .nan
- title_md: suite_qiime2__phylogeny
description_md: .nan
- title_md: suite_qiime2__quality_control
description_md: .nan
- title_md: suite_qiime2__quality_filter
description_md: .nan
- title_md: suite_qiime2__rescript
description_md: .nan
- title_md: suite_qiime2__sample_classifier
description_md: .nan
- title_md: suite_qiime2__taxa
description_md: .nan
- title_md: suite_qiime2__vsearch
description_md: .nan
- title_md: suite_qiime2_core
description_md: .nan
- title_md: suite_qiime2_core__tools
description_md: .nan
- title_md: t2ps
description_md: Draw phylogeny
- title_md: t2t_report
description_md: Summarize taxonomy
- title_md: t_coffee
description_md: T-Coffee
- title_md: taxonomy_krona_chart
description_md: Krona pie chart from taxonomic profile
- title_md: tb-profiler
description_md: Processes M. tuberculosis sequence data to infer strain type and
identify known drug resistance markers.
- title_md: tooldistillator
description_md: ToolDistillator extract and aggregate information from different
tool outputs to JSON parsable files
- title_md: transit
description_md: TRANSIT
- title_md: transtermhp
description_md: Finds rho-independent transcription terminators in bacterial genomes
- title_md: trim_galore
description_md: Trim Galore adaptive quality and adapter trimmer
- title_md: trycycler
description_md: Trycycler toolkit wrappers
- title_md: unicycler
description_md: Unicycler is a hybrid assembly pipeline for bacterial genomes.
- title_md: unipept
description_md: Unipept retrieves metaproteomics information
- title_md: uniprotxml_downloader
description_md: Download UniProt proteome in XML or fasta format
- title_md: usher
description_md: UShER toolkit wrappers
- title_md: valet
description_md: A pipeline for detecting mis-assemblies in metagenomic assemblies.
- title_md: vapor
description_md: Classify Influenza samples from raw short read sequence data
- title_md: varvamp
description_md: Variable VirusAMPlicons (varVAMP) is a tool to design primers
for highly diverse viruses
- title_md: vegan
description_md: an R package fo community ecologist
- title_md: velvet
description_md: de novo genomic assembler specially designed for short read sequencing
technologies
- title_md: velvet_optimiser
description_md: Automatically optimize Velvet assemblies
- title_md: virAnnot
description_md: virAnnot wrappers
- title_md: vsearch
description_md: VSEARCH including searching, clustering, chimera detection, dereplication,
sorting, masking and shuffling of sequences.
- title_md: wtdbg
description_md: WTDBG is a fuzzy Bruijn graph (FBG) approach to long noisy reads
assembly.

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