Built site for gh-pages

paocorrales · Jan 25, 2024 · bdc8c96 · bdc8c96
1 parent f3a43ae
commit bdc8c96
Show file tree

Hide file tree

Showing 27 changed files with 2,819 additions and 517 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-07be55b6
+580ea979
diff --git a/about.html b/about.html
diff --git a/content/gsi/01-gsi.html b/content/gsi/01-gsi.html
diff --git a/content/gsi/02-convencionals.html b/content/gsi/02-convencionals.html
diff --git a/content/gsi/03-radiances.html b/content/gsi/03-radiances.html
diff --git a/content/gsi/04-diagfiles.html b/content/gsi/04-diagfiles.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.3.450">
+<meta name="generator" content="quarto-1.4.549">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
@@ -45,7 +45,13 @@
   "collapse-after": 3,
   "panel-placement": "end",
   "type": "overlay",
-  "limit": 20,
+  "limit": 50,
+  "keyboard-shortcut": [
+    "f",
+    "/",
+    "s"
+  ],
+  "show-item-context": false,
   "language": {
     "search-no-results-text": "No results",
     "search-matching-documents-text": "matching documents",
@@ -54,6 +60,7 @@
     "search-more-match-text": "more match in this document",
     "search-more-matches-text": "more matches in this document",
     "search-clear-button-title": "Clear",
+    "search-text-placeholder": "",
     "search-detached-cancel-button-title": "Cancel",
     "search-submit-button-title": "Submit",
     "search-label": "Search"
@@ -68,9 +75,9 @@
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
-    <nav class="navbar navbar-expand-lg navbar-dark ">
+    <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
-      <div class="navbar-brand-container">
+      <div class="navbar-brand-container mx-auto">
     <a class="navbar-brand" href="../../index.html">
     <span class="navbar-title">DA-documentation</span>
     </a>
@@ -82,56 +89,56 @@
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
   <li class="nav-item">
-    <a class="nav-link" href="../../index.html" rel="" target="">
- <span class="menu-text">Home</span></a>
+    <a class="nav-link" href="../../index.html"> 
+<span class="menu-text">Home</span></a>
   </li>  
   <li class="nav-item">
-    <a class="nav-link" href="../../about.html" rel="" target="">
- <span class="menu-text">About this page</span></a>
+    <a class="nav-link" href="../../about.html"> 
+<span class="menu-text">About this page</span></a>
   </li>  
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-gsi" role="button" data-bs-toggle="dropdown" aria-expanded="false" rel="" target="">
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-gsi" role="button" data-bs-toggle="dropdown" aria-expanded="false">
  <span class="menu-text">GSI</span>
     </a>
     <ul class="dropdown-menu" aria-labelledby="nav-menu-gsi">    
         <li>
-    <a class="dropdown-item" href="../../content/gsi/01-gsi.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/gsi/01-gsi.html">
  <span class="dropdown-text">How GSI works</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../content/gsi/02-convencionals.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/gsi/02-convencionals.html">
  <span class="dropdown-text">Assimilation of conventional obs</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../content/gsi/03-radiances.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/gsi/03-radiances.html">
  <span class="dropdown-text">Assimilation of radiances</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../content/gsi/04-diagfiles.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/gsi/04-diagfiles.html">
  <span class="dropdown-text">Undestanding diag files</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../content/gsi/05-tutorial.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/gsi/05-tutorial.html">
  <span class="dropdown-text">Tutorial</span></a>
   </li>  
     </ul>
   </li>
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-observations" role="button" data-bs-toggle="dropdown" aria-expanded="false" rel="" target="">
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-observations" role="button" data-bs-toggle="dropdown" aria-expanded="false">
  <span class="menu-text">Observations</span>
     </a>
     <ul class="dropdown-menu" aria-labelledby="nav-menu-observations">    
         <li>
-    <a class="dropdown-item" href="../../content/observations/01-bufr.html" rel="" target="">
+    <a class="dropdown-item" href="../../content/observations/01-bufr.html">
  <span class="dropdown-text">Working with bufr files</span></a>
   </li>  
     </ul>
   </li>
 </ul>
-            <div class="quarto-navbar-tools ms-auto">
-    <a href="https://github.com/paocorrales/DA-documentation" rel="" title="GitHub" class="quarto-navigation-tool px-1" aria-label="GitHub"><i class="bi bi-github"></i></a>
-</div>
           </div> <!-- /navcollapse -->
+          <div class="quarto-navbar-tools">
+    <a href="https://github.com/paocorrales/DA-documentation" title="GitHub" class="quarto-navigation-tool px-1" aria-label="GitHub"><i class="bi bi-github"></i></a>
+</div>
       </div> <!-- /container-fluid -->
     </nav>
 </header>
@@ -160,8 +167,10 @@ <h1 class="title">Undestanding diag files</h1>
   </div>
 
 
+
 </header>
 
+
 <p>Scrips para decodificar</p>
 <p>rutina que los genera</p>
 
@@ -247,10 +256,9 @@ <h1 class="title">Undestanding diag files</h1>
     // clear code selection
     e.clearSelection();
   });
-  function tippyHover(el, contentFn) {
+  function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
-      content: contentFn,
       maxWidth: 500,
       delay: 100,
       arrow: false,
@@ -260,8 +268,17 @@ <h1 class="title">Undestanding diag files</h1>
       interactive: true,
       interactiveBorder: 10,
       theme: 'quarto',
-      placement: 'bottom-start'
+      placement: 'bottom-start',
     };
+    if (contentFn) {
+      config.content = contentFn;
+    }
+    if (onTriggerFn) {
+      config.onTrigger = onTriggerFn;
+    }
+    if (onUntriggerFn) {
+      config.onUntrigger = onUntriggerFn;
+    }
     window.tippy(el, config); 
   }
   const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
@@ -275,6 +292,125 @@ <h1 class="title">Undestanding diag files</h1>
       const note = window.document.getElementById(id);
       return note.innerHTML;
     });
+  }
+  const xrefs = window.document.querySelectorAll('a.quarto-xref');
+  const processXRef = (id, note) => {
+    // Strip column container classes
+    const stripColumnClz = (el) => {
+      el.classList.remove("page-full", "page-columns");
+      if (el.children) {
+        for (const child of el.children) {
+          stripColumnClz(child);
+        }
+      }
+    }
+    stripColumnClz(note)
+    if (id === null || id.startsWith('sec-')) {
+      // Special case sections, only their first couple elements
+      const container = document.createElement("div");
+      if (note.children && note.children.length > 2) {
+        container.appendChild(note.children[0].cloneNode(true));
+        for (let i = 1; i < note.children.length; i++) {
+          const child = note.children[i];
+          if (child.tagName === "P" && child.innerText === "") {
+            continue;
+          } else {
+            container.appendChild(child.cloneNode(true));
+            break;
+          }
+        }
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(container);
+        }
+        return container.innerHTML
+      } else {
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(note);
+        }
+        return note.innerHTML;
+      }
+    } else {
+      // Remove any anchor links if they are present
+      const anchorLink = note.querySelector('a.anchorjs-link');
+      if (anchorLink) {
+        anchorLink.remove();
+      }
+      if (window.Quarto?.typesetMath) {
+        window.Quarto.typesetMath(note);
+      }
+      // TODO in 1.5, we should make sure this works without a callout special case
+      if (note.classList.contains("callout")) {
+        return note.outerHTML;
+      } else {
+        return note.innerHTML;
+      }
+    }
+  }
+  for (var i=0; i<xrefs.length; i++) {
+    const xref = xrefs[i];
+    tippyHover(xref, undefined, function(instance) {
+      instance.disable();
+      let url = xref.getAttribute('href');
+      let hash = undefined; 
+      if (url.startsWith('#')) {
+        hash = url;
+      } else {
+        try { hash = new URL(url).hash; } catch {}
+      }
+      if (hash) {
+        const id = hash.replace(/^#\/?/, "");
+        const note = window.document.getElementById(id);
+        if (note !== null) {
+          try {
+            const html = processXRef(id, note.cloneNode(true));
+            instance.setContent(html);
+          } finally {
+            instance.enable();
+            instance.show();
+          }
+        } else {
+          // See if we can fetch this
+          fetch(url.split('#')[0])
+          .then(res => res.text())
+          .then(html => {
+            const parser = new DOMParser();
+            const htmlDoc = parser.parseFromString(html, "text/html");
+            const note = htmlDoc.getElementById(id);
+            if (note !== null) {
+              const html = processXRef(id, note);
+              instance.setContent(html);
+            } 
+          }).finally(() => {
+            instance.enable();
+            instance.show();
+          });
+        }
+      } else {
+        // See if we can fetch a full url (with no hash to target)
+        // This is a special case and we should probably do some content thinning / targeting
+        fetch(url)
+        .then(res => res.text())
+        .then(html => {
+          const parser = new DOMParser();
+          const htmlDoc = parser.parseFromString(html, "text/html");
+          const note = htmlDoc.querySelector('main.content');
+          if (note !== null) {
+            // This should only happen for chapter cross references
+            // (since there is no id in the URL)
+            // remove the first header
+            if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
+              note.children[0].remove();
+            }
+            const html = processXRef(null, note);
+            instance.setContent(html);
+          } 
+        }).finally(() => {
+          instance.enable();
+          instance.show();
+        });
+      }
+    }, function(instance) {
+    });
   }
       let selectedAnnoteEl;
       const selectorForAnnotation = ( cell, annotation) => {
@@ -317,6 +453,7 @@ <h1 class="title">Undestanding diag files</h1>
             }
             div.style.top = top - 2 + "px";
             div.style.height = height + 4 + "px";
+            div.style.left = 0;
             let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
             if (gutterDiv === null) {
               gutterDiv = window.document.createElement("div");
@@ -342,6 +479,32 @@ <h1 class="title">Undestanding diag files</h1>
         });
         selectedAnnoteEl = undefined;
       };
+        // Handle positioning of the toggle
+    window.addEventListener(
+      "resize",
+      throttle(() => {
+        elRect = undefined;
+        if (selectedAnnoteEl) {
+          selectCodeLines(selectedAnnoteEl);
+        }
+      }, 10)
+    );
+    function throttle(fn, ms) {
+    let throttle = false;
+    let timer;
+      return (...args) => {
+        if(!throttle) { // first call gets through
+            fn.apply(this, args);
+            throttle = true;
+        } else { // all the others get throttled
+            if(timer) clearTimeout(timer); // cancel #2
+            timer = setTimeout(() => {
+              fn.apply(this, args);
+              timer = throttle = false;
+            }, ms);
+        }
+      };
+    }
       // Attach click handler to the DT
       const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
       for (const annoteDlNode of annoteDls) {
@@ -410,16 +573,24 @@ <h1 class="title">Undestanding diag files</h1>
     <div class="nav-footer-center">
       <ul class="footer-items list-unstyled">
     <li class="nav-item">
-    <a class="nav-link" href="../../about.html">About</a>
+    <a class="nav-link" href="../../about.html">
+<p>About</p>
+</a>
   </li>  
     <li class="nav-item">
-    <a class="nav-link" href="../../license.html">License</a>
+    <a class="nav-link" href="../../license.html">
+<p>License</p>
+</a>
   </li>  
     <li class="nav-item">
-    <a class="nav-link" href="../../contribute.html">Contribute</a>
+    <a class="nav-link" href="../../contribute.html">
+<p>Contribute</p>
+</a>
   </li>  
     <li class="nav-item">
-    <a class="nav-link" href="../../contributors.html">Contributors</a>
+    <a class="nav-link" href="../../contributors.html">
+<p>Contributors</p>
+</a>
   </li>  
     <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/paocorrales/DA-documentation">
@@ -428,7 +599,7 @@ <h1 class="title">Undestanding diag files</h1>
     </a>
   </li>  
 </ul>
-    <div class="toc-actions"><div><i class="bi bi-github"></i></div><div class="action-links"><p><a href="https://github.com/paocorrales/DA-documentation/edit/main/content/gsi/04-diagfiles.qmd" class="toc-action">Edit this page</a></p><p><a href="https://github.com/paocorrales/DA-documentation/issues/new/choose" class="toc-action">Report an issue</a></p></div></div></div>
+    <div class="toc-actions"><ul><li><a href="https://github.com/paocorrales/DA-documentation/edit/main/content/gsi/04-diagfiles.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/paocorrales/DA-documentation/issues/new/choose" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
     <div class="nav-footer-right">
       &nbsp;
     </div>
@@ -437,4 +608,5 @@ <h1 class="title">Undestanding diag files</h1>
 
 
 
+
 </body></html>