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pachterlab · Feb 16, 2020 · ae81a86 · ae81a86
1 parent 72f406c
commit ae81a86
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/src/ProcessReads.cpp b/src/ProcessReads.cpp
@@ -1422,10 +1422,10 @@ void BUSProcessor::processBuffer() {
     // find where the sequence is
     const char *seq = nullptr;
 
-    int seqlen = 0;
+    size_t seqlen = 0;
     if (singleSeq) {
-      const char *seq = s[seqopt.fileno] + seqopt.start;
-      int seqlen = l[seqopt.fileno];
+      seq = s[seqopt.fileno] + seqopt.start;
+      seqlen = l[seqopt.fileno];
     } else {
       seqbuffer.clear();
       for (int j = 0; j < busopt.seq.size(); j++) {
@@ -1436,6 +1436,7 @@ void BUSProcessor::processBuffer() {
       }
       seqbuffer.push_back(0);
       seq = seqbuffer.c_str();
+      seqlen = seqbuffer.size();
     }
 
     // copy the umi

diff --git a/src/common.h b/src/common.h
@@ -1,7 +1,7 @@
 #ifndef KALLISTO_COMMON_H
 #define KALLISTO_COMMON_H
 
-#define KALLISTO_VERSION "0.46.1"
+#define KALLISTO_VERSION "0.46.2"
 
 #include <string>
 #include <vector>