Merge pull request #61 from p2m2/develop

v0.3.0

.devcontainer/devcontainer.json

@@ -0,0 +1,46 @@
+// © 2024 INRAE
+// SPDX-FileContributor: Marcellino Palerme <[email protected]>
+//
+// SPDX-License-Identifier: MIT
+
+// For format details, see https://aka.ms/devcontainer.json. For config options, see the
+// README at: https://github.com/devcontainers/templates/tree/main/src/docker-existing-docker-compose
+{
+	"name": "Existing Docker Compose (Extend)",
+
+	// Update the 'dockerComposeFile' list if you have more compose files or use different names.
+	// The .devcontainer/docker-compose.yml file contains any overrides you need/want to make.
+	"dockerComposeFile": [
+		"../compose.yaml",
+		"docker-compose.yml"
+	],
+
+	// The 'service' property is the name of the service for the container that VS Code should
+	// use. Update this value and .devcontainer/docker-compose.yml to the real service name.
+	"service": "web",
+
+	// The optional 'workspaceFolder' property is the path VS Code should open by default when
+	// connected. This is typically a file mount in .devcontainer/docker-compose.yml
+	"workspaceFolder": "/workspaces/${localWorkspaceFolderBasename}"
+
+	// Features to add to the dev container. More info: https://containers.dev/features.
+	// "features": {},
+
+	// Use 'forwardPorts' to make a list of ports inside the container available locally.
+	// "forwardPorts": [],
+
+	// Uncomment the next line if you want start specific services in your Docker Compose config.
+	// "runServices": [],
+
+	// Uncomment the next line if you want to keep your containers running after VS Code shuts down.
+	// "shutdownAction": "none",
+
+	// Uncomment the next line to run commands after the container is created.
+	// "postCreateCommand": "cat /etc/os-release",
+
+	// Configure tool-specific properties.
+	// "customizations": {},
+
+	// Uncomment to connect as an existing user other than the container default. More info: https://aka.ms/dev-containers-non-root.
+	// "remoteUser": "devcontainer"
+}

.devcontainer/docker-compose.yml

@@ -0,0 +1,31 @@
+# © 2024 INRAE
+# SPDX-FileContributor: Marcellino Palerme <[email protected]>
+
+# SPDX-License-Identifier: MIT
+
+version: '3.8'
+services:
+  # Update this to the name of the service you want to work with in your docker-compose.yml file
+  web:
+    # Uncomment if you want to override the service's Dockerfile to one in the .devcontainer 
+    # folder. Note that the path of the Dockerfile and context is relative to the *primary* 
+    # docker-compose.yml file (the first in the devcontainer.json "dockerComposeFile"
+    # array). The sample below assumes your primary file is in the root of your project.
+    #
+    # build:
+    #   context: .
+    #   dockerfile: .devcontainer/Dockerfile
+
+    volumes:
+      # Update this to wherever you want VS Code to mount the folder of your project
+      - ..:/workspaces:cached
+
+    # Uncomment the next four lines if you will use a ptrace-based debugger like C++, Go, and Rust.
+    # cap_add:
+    #   - SYS_PTRACE
+    # security_opt:
+    #   - seccomp:unconfined
+
+    # Overrides default command so things don't shut down after the process ends.
+    command: sleep infinity
+

.env.dev

@@ -6,8 +6,9 @@
 NUXT_URL_P2M2_API_PARSE="http://localhost:8080/p2m2tools/api/format/parse/"
 NUXT_URL_P2M2_API_SNIF="http://localhost:8080/p2m2tools/api/format/sniffer"
 NUXT_PATH_SHARE="./shareFile"
+NUXT_L_PARTNER="P2M2,IGEPP,INRAE,BIA,IFPC,MTH"
 PGHOST="localhost"
 PGPASSWORD="ep2m2"
 PGUSER="ep2m2"
 PGPORT="5432"
-PGDATABASE="ep2m2db"
+PGDATABASE="ep2m2db"

.eslintrc.cjs

@@ -3,6 +3,8 @@
 //
 // SPDX-License-Identifier: MIT
 
+// USE UNTIL ESLINT 9.0.0
+
 module.exports = {
     root: true,
     extends: ['@nuxt/eslint-config'],

README.md

@@ -12,11 +12,11 @@ __0.2.1__
 
 ## Reuse compliance
 <!--REUSE--></br>
-[![Reuse compliant](./badges/reuse_compliant.svg)](https://github.com/p2m2/EP2M2/actions/runs/11209877737)<!--REUSE-END-->  
+[![Reuse compliant](./badges/reuse_compliant.svg)](https://github.com/p2m2/EP2M2/actions/runs/11927197538)<!--REUSE-END-->  
 
 ## Tests
 <!--GAMFC--></br>
-[![result](./badges/tests-result.svg) ![total](./badges/tests-total.svg) ![passed](./badges/tests-passed.svg) ![failed](./badges/tests-failed.svg) ![todo](./badges/tests-todo.svg)](https://github.com/p2m2/EP2M2/actions/runs/11209877737) </br>[![Branches](./badges/coverage-branches.svg) ![Functions](./badges/coverage-functions.svg) ![Lines](./badges/coverage-lines.svg)![Statements](./badges/coverage-statements.svg) ![Coverage total](./badges/coverage-total.svg)](https://github.com/p2m2/EP2M2/actions/runs/11209877737)<!--GAMFC-END-->
+[![result](./badges/tests-result.svg) ![total](./badges/tests-total.svg) ![passed](./badges/tests-passed.svg) ![failed](./badges/tests-failed.svg) ![todo](./badges/tests-todo.svg)](https://github.com/p2m2/EP2M2/actions/runs/11927197538) </br>[![Branches](./badges/coverage-branches.svg) ![Functions](./badges/coverage-functions.svg) ![Lines](./badges/coverage-lines.svg)![Statements](./badges/coverage-statements.svg) ![Coverage total](./badges/coverage-total.svg)](https://github.com/p2m2/EP2M2/actions/runs/11927197538)<!--GAMFC-END-->
 ## Features
 - Extraction of formats files of the metabolomics data acquisition devices of the P2M2 platform
   - gcms