resolving merge conflict

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,38 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/custom.md

@@ -0,0 +1,10 @@
+---
+name: Custom issue template
+about: Describe this issue template's purpose here.
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,20 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

Backend/src/API.py

@@ -103,5 +103,4 @@ def find_sections():
     return 'OK'
 
 if __name__ == '__main__':
-    app.run(debug=True)
-
+    app.run(debug=True)

Backend/src/APIusingCMD.py

@@ -0,0 +1,149 @@
+from flask import Flask, request
+from docx import Document
+from pathlib import Path
+import sys 
+
+#@app.route('/find-sections', methods=['POST'])
+def find_sections():
+    # Check for missing request data
+    """
+    if 'file_path' not in request.json:
+        return 'Missing file_path field', 400
+    if 'search_terms' not in request.json:
+        return 'Missing search_terms field', 400
+    if 'sections' not in request.json:
+        return 'Missing sections field', 400
+    if 'specifyLines' not in request.json:
+        return 'Missing specifyLines field', 400
+    if 'use_total_lines' not in request.json:
+        return 'Missing use_total_lines field', 400
+    if 'lines' not in request.json:
+        return 'Missing lines field', 400
+    """
+
+    # Get the file path from the request
+
+    file_path = sys.argv[1]
+    tempSearch_terms = sys.argv[2]
+    tempSections  = sys.argv[3]
+    tempSpecifyLines = sys.argv[4]
+    tempUse_total_lines = sys.argv[5]
+    tempTotal_lines = sys.argv[6]
+
+
+    search_terms = [tempSearch_terms]
+    use_total_lines = bool(tempUse_total_lines)
+    total_lines = int(tempTotal_lines)
+
+    tempSections = list(tempSections)
+    sections = [int(val) for val in tempSections]
+
+    specifyLines = []
+    num = 0
+    while num <= len(sections):
+        specifyLines.append(tempSpecifyLines)
+        num += num + 1
+
+
+    """file_path = request.json['file_path']"""
+
+    # Read the file
+    with open(file_path, 'r') as f:
+        Lines = f.readlines()
+
+    # Get the search terms, sections, and lines from the request
+    """
+    search_terms = request.json['search_terms']
+    sections = request.json['sections']
+    specifyLines = request.json['specifyLines']
+    use_total_lines = request.json['use_total_lines']
+    total_lines = request.json['lines']
+    """
+
+    # Create a new document
+    document = Document()
+
+    # Iterate over the search terms and find the corresponding sections
+    for term in search_terms:
+        lineNo = 0
+        termLineNo = []
+        termsNum = 0
+        for line in Lines:
+            if term in line:
+                termLineNo.append(lineNo)
+                termsNum += 1
+                #print(termsNum, term)
+            lineNo += 1
+
+
+
+        # Add the sections to the document
+
+
+        for i in sections:
+            section_lines = specifyLines[i-1].split()
+            start_line = termLineNo[i-1]
+            line_empty = 0
+
+            if section_lines[0] == 'WHOLE' and use_total_lines == False:
+                while line_empty == 0:
+                    if Lines[start_line] != "\n":
+                        section = document.add_paragraph(Lines[start_line])
+                        start_line += 1
+                    else:
+                        line_empty = 1
+
+            if section_lines[0] == 'WHOLE' and use_total_lines == True:
+                for _ in range(total_lines - start_line + termLineNo[i-1]):
+                    section = document.add_paragraph(Lines[start_line])
+                    start_line += 1
+                    line_empty = 1
+                else:
+                    start_line += 1
+                    line_empty = 1
+
+            elif section_lines[0] == 'FIRST':
+                line_count = -1
+                while line_count < int(section_lines[1]):
+                    section = document.add_paragraph(Lines[start_line])
+                    start_line += 1
+                    line_count += 1
+
+            elif section_lines[0] == 'LAST':
+                line_count = -1
+                document.add_paragraph(Lines[start_line])
+                document.add_paragraph(Lines[start_line + 1])
+                while line_count < int(section_lines[1]):
+                    section = document.add_paragraph(Lines[start_line+10])
+                    start_line += 1
+                    line_count += 1
+
+            elif section_lines[0] == 'SPECIFIC':
+                specific_lines = [int(l) for l in section_lines[1].split(",")]
+                document.add_paragraph(Lines[start_line])
+                for l in specific_lines:
+                    section = document.add_paragraph(Lines[start_line + l + 1])
+
+
+
+
+    try:
+        # Save the document
+        final_location = Path("../../../esp/outputData/data_conversion.docx")
+        final_location = final_location.resolve()
+        document.save(final_location)
+    except Exception as e:
+        return f'Error saving document: {e}', 500
+
+    return 'OK'
+
+
+
+    """
+    if __name__ == '__main__':
+    app.run(debug=True)
+    """
+
+
+result = find_sections()
+print(result)

Backend/src/READMEforAPIusingCMD.txt

@@ -0,0 +1,16 @@
+In regards to the arguments, reference the sample line below:
+
+python APIusingCMD.py "C:\Users\seala\csci4961\ORCAdata\Styrene-bd2.txt" "CARTESIAN COORDINATES (ANGSTROEM)" 123 "FIRST 6" True 2000
+
+To start, you must call python APIusingCMD.py. The remaining arguments represent each component one needs to generate
+the output file.
+
+Arguments:
+
+0 - name of python file (APIusingCMD.py)
+1 - The dir of the input file location 
+2 - The key terms one desires **note: key terms must be in all caps and within quotes (""), this argument is sensitive  to caps and spaces. 
+3 - The list of sections, pass this as a string with no spaces (i.e. 123 will turn into a list [1,2,3] of ints
+4 - represents the specify lines element, This must be a string, such as "WHOLE", "FIRST", "LAST" or "SPECIFIC", where for first and last, you must specify a number. for instance, "FIRST 6" (**note the space and the use of all caps) stands for the first six lines of that section. 
+5 - A bool value to use the total lines passed in the last argument or not. Pass this as a string either True or False.
+6 - total number of lines for the output doc. pass this as a string such as 2000

Prototypes/README.txt

@@ -0,0 +1,8 @@
+/* The code in this folder is the code for the prototype view of the home page. This was created on February 12th, 
+2023. To get this view working, simply take the .ts, .css, and .html files in this folder and use them to replace
+the files located in the \frontend dashboard folder. The path below is an example of one of the files you would want
+to replace to get this code working. Note that you must safely store the files stored in \frontend elsewhere while 
+using these files located in prototype. 
+
+...\esp\frontend\orca_data_converter\src\app\views\dashboard\dashboard.component.ts
+ */

Prototypes/dashboardPrototype.css

@@ -0,0 +1,71 @@
+:host ::ng-deep .custom-ms 
+            .p-multiselect-label {
+            width: 300px !important;
+        }
+
+        #whole {
+            font-family: 'Calibri';
+            font-size: 20px;
+            text-align: center;
+            padding: 80px 0;
+        }
+
+        #customFile {
+            display: none;
+        }
+
+        .form-label {
+            border: 1px solid #ccc;
+            border-radius: 5px;
+            display: inline-block;
+            padding: 8px 15px;
+            cursor: pointer;
+            font-size: 18px;
+            transition-duration: 0.7s;
+        }
+
+        .form-label:hover {
+            background-color: black;
+            color:white;
+        }
+
+        #keyTerms-toSearch {
+            border: 1px solid #ccc;
+            border-radius: 5px;
+            padding: 8px 12px;
+            width: 210x;
+            box-sizing: border-box;
+            font-size: 18px;
+        }
+
+
+        #fileNameInput {
+            border: 1px solid #ccc;
+            border-radius: 5px;
+            padding: 8px 12px;
+            width: 210x;
+            box-sizing: border-box;
+            font-size: 18px;
+        }
+
+        #fileNameInput:focus {
+            border: 2px solid #555;
+        }
+
+        #downloadButton {
+            font-family: 'Calibri';
+            font-size: 18px;
+            color: black;
+            background-color: white;
+            border: 1px solid #ccc;
+            border-radius: 5px;
+            margin-top: 25px;
+            padding: 20px;
+            transition-duration: 0.7s;
+            cursor: pointer;
+        }
+
+        #downloadButton:hover {
+            background-color: black;
+            color:white;
+        }