add region test on wrong seq ID #250

test/data/NC_002127.1-region.wrong-ids.gff3

@@ -0,0 +1,12 @@
+##gff-version 3
+##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo
+# Annotated with Bakta
+# Software: v1.8.2
+# Database: v5.0, light
+# DOI: 10.1099/mgen.0.000685
+# URL: github.com/oschwengers/bakta
+##sequence-region NC_002127.1 1 3306
+NC_002127.1	Bakta	region	1	3306	.	+	.	ID=NC_002127.1;Name=NC_002127.1;Is_circular=true
+NC_002127.1	?	CDS	32	736	.	+	0	ID=DOGAIA_00005;NAME=alternative downstream start codon test case 1
+wrong_id	?	CDS	981	1121	.	+	0	ID=DOGAIA_00006;NAME=additional overlapping CDS test case 3
+NC_002127.1	?	CDS	1348	2229	.	-	0	ID=DOGAIA_00015;NAME=alternative downstream start codon test case 2

test/test_regions.py

@@ -9,15 +9,25 @@
 from .conftest import FILES
 
 
+def test_wrong_seq_id_failiing(tmpdir):
+    # CDS test on plasmid
+    proc = run(
+        ['bin/bakta', '--db', 'test/db', '--verbose', '--output', tmpdir, '--force', '--prefix', 'test', '--regions', f'test/data/NC_002127.1-region.wrong-ids.gff3'] +
+        ['--skip-tmrna', '--skip-trna', '--skip-rrna', '--skip-ncrna', '--skip-ncrna-region', '--skip-sorf', '--skip-ori', '--skip-gap', '--skip-plot'] +
+        ['test/data/NC_002127.1.fna.gz']
+    )
+    assert proc.returncode != 0
+
+
 @pytest.mark.parametrize(
     'regions',
     [
         ('NC_002127.1-region.gff3'),  # GFF3
         ('NC_002127.1-region.gbff')  # Genbank
     ]
 )
-def test_bakta_plasmid(regions, tmpdir):
-    # full test on plasmid
+def test_regions_plasmid(regions, tmpdir):
+    # CDS test on plasmid
     proc = run(
         ['bin/bakta', '--db', 'test/db', '--verbose', '--output', tmpdir, '--force', '--prefix', 'test', '--regions', f'test/data/{regions}'] +
         ['--skip-tmrna', '--skip-trna', '--skip-rrna', '--skip-ncrna', '--skip-ncrna-region', '--skip-sorf', '--skip-ori', '--skip-gap', '--skip-plot'] +