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    23 repositories

    • unipept

      Public
      A Ruby on Rails application for proteomics data analysis
      data-visualizationdata-analysisuniprotmetaproteomicsunipept
      Vue
      •4•23•24•3•Updated Dec 24, 2024Dec 24, 2024

    • unipept-api

      Public
      Ruby-on-Rails implementation of Unipept's backend.
      Rust
      •0•2•5•6•Updated Dec 20, 2024Dec 20, 2024

    • pathway-pilot

      Public
      TypeScript
      •
      Apache License 2.0
      •0•3•1•0•Updated Dec 13, 2024Dec 13, 2024

    • peptonizer

      Public archive
      Python
      •0•0•0•1•Updated Dec 5, 2024Dec 5, 2024

    • unipept-libsais

      Public
      libsais is a library for linear time suffix array based on induced sorting algorithm.
      C
      •
      Apache License 2.0
      •24•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • unipept-index

      Public
      Rust
      •
      MIT License
      •1•0•6•2•Updated Dec 2, 2024Dec 2, 2024

    • unipept-cli

      Public
      Unipept command line interface
      metaproteomicsunipeptruby
      TypeScript
      •
      MIT License
      •2•5•9•1•Updated Dec 1, 2024Dec 1, 2024

    • unipept-database

      Public
      Makes database tables and indices for Unipept
      Rust
      •
      MIT License
      •2•0•3•9•Updated Dec 1, 2024Dec 1, 2024

    • ClassiCOL

      Public
      Python
      •1•0•0•1•Updated Sep 18, 2024Sep 18, 2024

    • unipept-devcontainers

      Public
      Contains a set of feature definitions, specific to Unipept, for use in devcontainers (supported by both Intellij and VS Code).
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • unipept-desktop

      Public
      This is the desktop application that accompanies the Unipept project.
      Pep8
      •
      MIT License
      •0•7•32•18•Updated Aug 8, 2024Aug 8, 2024

    • unipept-web-components

      Public
      This repository contains isolated Vue-components that can be reused throughout multiple Unipept-projects.
      Vue
      •1•1•10•2•Updated Aug 5, 2024Aug 5, 2024

    • unipept-dev-features

      Public
      A repository containing some Unipept-specific features that can be included in Devcontainers.
      0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • docker-images

      Public
      A collection of Docker-containers that support the inner workings of the Unipept project.
      Dockerfile
      •0•0•3•1•Updated May 29, 2024May 29, 2024

    • unique-peptide-finder

      Public
      Python
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • umgap

      Public
      A taxonomic classifier for shotgun metagenomics reads
      taxonomymetagenomics
      Rust
      •
      MIT License
      •6•12•3•0•Updated Feb 28, 2024Feb 28, 2024

    • unipept-visualizations

      Public
      Visualisations used by Unipept, packaged for easy reuse in other projects.
      d3unipepttaxonomytreemapvisualizationstreeviewsunburst
      TypeScript
      •
      MIT License
      •6•18•15•10•Updated Jan 9, 2024Jan 9, 2024

    • unipept-utilities

      Public
      A repository containing some utility scripts that are used for server administration, deployment and other management related tasks.
      JavaScript
      •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • eslint-config

      Public
      The ESLint configuration that's shared over all Unipept projects. This configuration is specifically aimed at projects that are using TypeScript and Vue.
      JavaScript
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • unipept-web

      Public archive
      Unipept repository containing the web frontend.
      Vue
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • FragGeneScanRs

      Public
      Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
      rust-langhidden-markov-modelgene-predictionshort-readsbioinformaticsgenomics
      Rust
      •
      GNU General Public License v3.0
      •1•24•6•0•Updated Mar 9, 2022Mar 9, 2022

    • FragGeneScanPlusPlus

      Public archive
      Scalable high-throughput short-read open reading frame prediction
      metagenomicsgene-prediction
      C
      •
      GNU General Public License v3.0
      •11•7•0•0•Updated Aug 24, 2021Aug 24, 2021

    • unipept-heatmap

      Public archive
      TypeScript
      •
      MIT License
      •0•0•2•1•Updated Mar 5, 2021Mar 5, 2021