Repositories list

• mbovpan

  Public
  Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

  snpcomparative-genomicstuberculosis+ 2pangenomenextflow-pipeline

  Nextflow

  •1•4•4•0•Updated May 21, 2024May 21, 2024

• LegallSalvador_MbovisPangenome

  Public
  Data, scripts, and useful resources for the analysis of global M. bovis isolates

  Jupyter Notebook

  •0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

• MinION_Transcriptome

  Public
  Python

  •0•0•1•0•Updated Apr 13, 2023Apr 13, 2023

• MetagenomicsToolsEvaluation

  Public
  This repository contains scripts to run 9 different shotgun metagenomics profiling software on a rat tissue dataset as well as scripts for their downstream analysis (import into R, alpha/beta diversity, & differential abundant analysis).

  softwaremicrobial-communitiesshotgun-metagenomics

  Shell

  •0•3•1•0•Updated Jan 17, 2023Jan 17, 2023

• LegallSalvador2022_MbovisAcrossScales

  Public
  files necessary to create figures

  0•0•1•0•Updated Jun 10, 2022Jun 10, 2022

• Summer2021_mbov

  Public
  Materials for paper submission

  Python

  •0•0•0•0•Updated Sep 30, 2021Sep 30, 2021

• QualifyingExamExamples

  Public
  A collection of Written & Oral Exam materials to make preparing for the UGA QualifyingExam

  2•0•0•0•Updated Aug 29, 2021Aug 29, 2021

• Bovis-PangenomeOfReservoirs

  Public
  HTML

  •0•0•0•0•Updated Feb 22, 2021Feb 22, 2021

• Lab-SocialGeneticStructure

  Public
  A Repository to combine information regarding the data for covid-19, human TB, and how social structures impact transmission.

  HTML

  •0•1•0•0•Updated Jun 12, 2020Jun 12, 2020