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@isb-cgc ISB Cancer Gateway in the Cloud

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    36 repositories

    • BigQueryTableSearch

      Public
      Standalone Big Query Table Search System
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • ISB-CGC-Webapp

      Public
      ISB CGC Webapp
      JavaScript
      •
      Apache License 2.0
      •9•12•4•0•Updated Jan 8, 2025Jan 8, 2025

    • ISB-CGC-Common

      Public
      Shared code between repositories
      Python
      •4•2•0•0•Updated Jan 8, 2025Jan 8, 2025

    • BQEcosystem

      Public
      BQ Table descriptions/schema and installation scripts
      Shell
      •3•0•2•0•Updated Jan 8, 2025Jan 8, 2025

    • NextGenETL

      Public
      ETL Processes and Scripts (2019)
      Python
      •4•3•0•4•Updated Jan 7, 2025Jan 7, 2025

    • cananolab

      Public
      caNanoLab is a web-based portal designed to capture nanotechnology data.
      JavaScript
      •
      Other
      •6•1•0•1•Updated Dec 17, 2024Dec 17, 2024

    • ISB-CGC-API

      Public
      Google Endpoints API Used to Drive CGC Webapp
      Python
      •
      Apache License 2.0
      •3•2•0•0•Updated Dec 13, 2024Dec 13, 2024

    • readthedocs

      Public
      Documentation for the ISB-CGC on Read the Docs.
      Python
      •
      Apache License 2.0
      •16•10•1•0•Updated Nov 27, 2024Nov 27, 2024

    • Community-Notebooks

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •3•10•0•0•Updated Nov 25, 2024Nov 25, 2024

    • bq-search-cron

      Public
      Cron job to keep BQ Search current
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • ISB-CGC-Demos

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Oct 4, 2024Oct 4, 2024

    • TP53

      Public
      Code for the TP53 database project
      JavaScript
      •
      Apache License 2.0
      •1•3•0•0•Updated Aug 8, 2024Aug 8, 2024

    • isb-cgc-ctb

      Public
      Chernobyl Tissue Biobank
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • ISB-CGC-CytoConverter

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • BQLogProcess

      Public
      For processing BQ logs
      Apache License 2.0
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • SL-Cloud-F1000

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 7, 2023Mar 7, 2023

    • ISB-CGC-data-proc

      Public
      code for uploading cancer data into GCS and BigQuery
      Python
      •
      Apache License 2.0
      •7•1•0•4•Updated Nov 2, 2022Nov 2, 2022

    • CytoConverter

      Public
      R
      •4•0•0•0•Updated Jul 15, 2022Jul 15, 2022

    • RunningWorkflows-on-the-GoogleCloud

      Public
      Shell
      •4•3•0•1•Updated Mar 4, 2022Mar 4, 2022

    • radiology-viewer

      Public
      Radiology Viewer
      Shell
      •0•1•0•0•Updated Aug 9, 2021Aug 9, 2021

    • ViewerDockerContainer

      Public
      Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.
      JavaScript
      •
      Apache License 2.0
      •8•1•0•0•Updated Aug 9, 2021Aug 9, 2021

    • quip_distro

      Public
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •16•0•0•0•Updated Aug 9, 2021Aug 9, 2021

    • caMicroscope

      Public
      Digital pathology image viewer with support for human/machine generated annotations and markups.
      JavaScript
      •
      Apache License 2.0
      •306•0•0•0•Updated Aug 9, 2021Aug 9, 2021

    • User-Data-Processor

      Public
      This is a repository devoted to the user data processor.
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Feb 7, 2021Feb 7, 2021

    • VariantData2BigQuery

      Public
      0•0•0•0•Updated Dec 11, 2020Dec 11, 2020

    • ohif-viewer

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared Meteor packages
      JavaScript
      •
      MIT License
      •3.5k•0•0•0•Updated Aug 1, 2019Aug 1, 2019

    • gargle

      Public
      Infrastructure for calling Google APIs from R, including auth
      R
      •
      Other
      •34•0•0•0•Updated Jul 26, 2019Jul 26, 2019

    • examples-Python

      Public
      Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
      Jupyter Notebook
      •
      Apache License 2.0
      •17•54•2•0•Updated Jul 20, 2019Jul 20, 2019

    • gemini

      Public
      a lightweight db framework for exploring genetic variation.
      Python
      •
      MIT License
      •120•0•0•0•Updated Sep 14, 2018Sep 14, 2018

    • examples-Compute

      Public
      Common Workflow Language
      •1•6•0•0•Updated Apr 25, 2018Apr 25, 2018