Repositories list

• biovcnet.github.io

  Public
  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  HTML

  •

  MIT License

  •45k•59•0•0•Updated Jun 26, 2022Jun 26, 2022

• python

  Public
  Repository for BVCN Python tutorials

  3•5•0•0•Updated Nov 4, 2021Nov 4, 2021

• steinegger-bvcn-presentation

  Public
  Repo for the hands-on demonstration that is part of the presentation - "Metagenomic pathogen detection using MMseqs2, Plass, and Linclust" by Dr. Martin Steinegger for the BVCN Conference 2021

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 8, 2021Jun 8, 2021

• BVCN_stats

  Public
  Figures for BVCN Manuscript

  R

  •1•0•0•0•Updated May 17, 2021May 17, 2021

• topic-pop-gen-and-comparative-genomics

  Public
  A repo for BVCN lessons on population genetics and comparative genomics

  HTML

  •0•1•0•0•Updated Dec 10, 2020Dec 10, 2020

• topic-functional-annotation

  Public
  A repository for the lessons and notebooks used for Binder tutorials

  Python

  •

  MIT License

  •9•13•0•0•Updated Oct 24, 2020Oct 24, 2020

• bvcn-binder-pseudofinder

  Public
  Python

  •2•0•0•0•Updated Oct 24, 2020Oct 24, 2020

• topic-metagenomics

  Public
  A repository for the lessons and notebooks used for Binder tutorials

  Shell

  •6•19•0•0•Updated Aug 4, 2020Aug 4, 2020

• bvcn-binder-trinity

  Public
  Tutorial on transcriptome assembly using Trinity

  Shell

  •4•1•0•0•Updated Aug 3, 2020Aug 3, 2020

• topic-transcriptomics

  Public
  A repo for BVCN transcriptomics lessons

  MIT License

  •2•6•0•2•Updated Aug 3, 2020Aug 3, 2020

• bvcn-binder-antismash

  Public
  Python

  •1•0•0•0•Updated Jul 31, 2020Jul 31, 2020

• bvcn-binder-checkm

  Public
  MAXScript

  •4•1•0•0•Updated Jul 29, 2020Jul 29, 2020

• topic-python-Lesson9-bindercontent

  Public
  Python Lesson 9- Ordinations part I for amplicons

  Jupyter Notebook

  •0•0•0•0•Updated Jul 15, 2020Jul 15, 2020

• topic-R

  Public
  A repository for the lessons and notebooks used for R tutorials.

  HTML

  •

  MIT License

  •13•6•0•0•Updated Jul 14, 2020Jul 14, 2020

• topic-amplicons

  Public
  A repository for the lessons and notebooks used for amplicons tutorials.

  HTML

  •7•4•0•0•Updated Jul 9, 2020Jul 9, 2020

• topic-python-Lesson8-bindercontent

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020

• topic-python-Lesson-7-BinderContent

  Public
  Notebook content and dependencies for python lesson 7

  Jupyter Notebook

  •0•1•0•0•Updated Jun 17, 2020Jun 17, 2020

• bvcn-binder-htseq

  Public
  Lesson and tutorial on generating count tables from read-mapping data

  Shell

  •2•4•0•0•Updated Jun 15, 2020Jun 15, 2020

• amplicons-lesson-3-repo

  Public
  A repository for files for Lesson 3 of Amplicons

  Jupyter Notebook

  •0•1•0•0•Updated Jun 7, 2020Jun 7, 2020

• topic-python-lesson-6-live-code

  Public
  dependencies input files and code for relative abundance demo

  Python

  •0•0•0•0•Updated Jun 3, 2020Jun 3, 2020

• NetworkScienceIntroduction

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated May 27, 2020May 27, 2020

• topic-python-lesson-5-live-code

  Public
  Binder components for Python Lesson 5

  Python

  •

  MIT License

  •0•0•0•0•Updated May 20, 2020May 20, 2020

• bvcn-binder-kegg-koala

  Public
  Lesson and tutorial on the KEGG database, and annotating with Blast/Ghost/KofamKOALA and KEGGDecoder

  Shell

  •3•0•0•0•Updated May 19, 2020May 19, 2020

• pythonL4LiveDemo

  Public
  files for live demo parsing fasta files

  Python

  •0•0•0•0•Updated May 15, 2020May 15, 2020

• bvcn-binder-paml

  Public
  Lesson and tutorial on generating codon alignments and estimating dN/dS using codeml (PAML)

  Roff

  •4•1•0•0•Updated May 12, 2020May 12, 2020

• pythonBinderContent-L2

  Public
  code for python channel lesson 2 (variables/datatypes)

  Jupyter Notebook

  •0•0•0•0•Updated May 11, 2020May 11, 2020

• metagenomics-binder-binning

  Public
  Shell

  •

  MIT License

  •0•0•0•0•Updated May 7, 2020May 7, 2020

• bvcn-binder-magiclamp

  Public
  Tutorial for the MagicCave toolkit

  HTML

  •3•0•0•0•Updated May 6, 2020May 6, 2020

• bvcn-binder-hmmgenie

  Public
  Learn about how to contribute your own Genie to the MagicCave toolkit

  HTML

  •2•0•0•0•Updated May 6, 2020May 6, 2020

• bvcn-binder-FeGenie

  Public
  Two introductory lectures and tutorial on the microbial iron cycle and FeGenie

  Python

  •3•0•0•0•Updated May 3, 2020May 3, 2020