Repositories list

• chado_custom_search

  Public
  Provides custom search functionality for those who don't wish to use Drupal Views.

  PHP

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• tripal_germplasm_importer

  Public
  Tripal 3 importer for saving germplasm into chado stock tables.

  PHP

  •

  GNU General Public License v3.0

  •0•1•2•0•Updated Jun 27, 2024Jun 27, 2024

• tripal_ws_brapi

  Public
  PHP

  •0•0•4•0•Updated Jun 27, 2024Jun 27, 2024

• tripal_qtl

  Public
  Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

  tripaltripal3-compatiblegenetic-maps+ 1qtl

  PHP

  •

  GNU General Public License v2.0

  •0•0•4•0•Updated Jun 27, 2024Jun 27, 2024

• nd_genotypes

  Public
  Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

  variantsmarkersgenotype+ 1tripal

  PHP

  •

  GNU General Public License v2.0

  •1•4•14•0•Updated Jun 27, 2024Jun 27, 2024

• tripal_bibtex

  Public
  A BibTEX importer for Tripal Publications.

  loaderpublicationstripal3-compatible+ 2tripalbibtex-files

  PHP

  •

  GNU General Public License v3.0

  •2•2•2•0•Updated Jun 27, 2024Jun 27, 2024

• helium_exporter

  Public
  Provides a data export of germplasm and phenotypic data for visualization using Helium.

  PHP

  •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• lims_rawseq

  Public
  Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.

  metadatasequencetripal+ 1lims

  PHP

  •0•0•3•0•Updated Mar 14, 2024Mar 14, 2024

• vcf_filter

  Public
  Form interface so users can custom filter existing VCF files and export in a variety of formats.

  vcftoolstripalvcf-files

  PHP

  •

  GNU General Public License v2.0

  •0•1•13•0•Updated Feb 12, 2024Feb 12, 2024

• kp_searches

  Public
  Provides custom search functionality for KnowPulse.

  PHP

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• rawphenotypes

  Public
  A Tripal module for storing raw phenotypic data. Specifically meant to help researchers contribute raw data, visualize summaries and download for further analysis.

  loaderraw-datatripal+ 2traitphenotypes

  PHP

  •2•2•23•0•Updated Aug 28, 2023Aug 28, 2023

• scripts

  Public
  Scripts and one-liners used by our group. Saved here so they are not forgotten...

  Perl

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

• uofspb_germplasm

  Public
  Drupal/Tripal: Provide support for germplasm.

  breedingtripalgermplasm

  PHP

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated May 12, 2023May 12, 2023

• genotypes_loader

  Public
  A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

  tripaltripal3-compatibleloader+ 3vcfgenotypechado

  PHP

  •

  GNU General Public License v2.0

  •2•1•10•0•Updated Apr 21, 2023Apr 21, 2023

• analyzedphenotypes

  Public
  Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

  loadertraitphenotypes+ 1tripal

  PHP

  •

  GNU General Public License v2.0

  •1•0•16•0•Updated Apr 20, 2023Apr 20, 2023

• uofs-pulse-binfo.github.io

  Public
  Provides the code for the Pulse Bioinformatics, University of Saskatchewan organization website.

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

• tripal_citation

  Public
  Tripal Fields specific to providing automated citations for data based on properties + publications

  PHP

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Oct 19, 2022Oct 19, 2022

• haplotype-map

  Public
  A library for visualizing haplotype data in the form a colored matrix.

  JavaScript

  •

  MIT License

  •4•0•0•0•Updated Jul 6, 2022Jul 6, 2022

• tripal_hq_imports

  Public archive
  Extends Tripal HQ to support TripalImporters.

  PHP

  •

  GNU General Public License v2.0

  •0•1•0•0•Updated Jun 22, 2022Jun 22, 2022

• kp_frontpage

  Public
  Customize the frontpage of KnowPulse.

  themefrontpagetripal+ 1knowpulse

  PHP

  •0•0•4•0•Updated May 30, 2022May 30, 2022

• synvisio

  Public
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.

  JavaScript

  •

  MIT License

  •14•0•0•0•Updated May 25, 2022May 25, 2022

• kptheme

  Public
  The Theme for KnowPulse

  themetripalknowpulse

  CSS

  •0•0•1•0•Updated Apr 1, 2022Apr 1, 2022

• BrAPI-Graphical-Filtering

  Public
  Tool for filtering BrAPI ObservationUnits and Germplasm by Observation values

  JavaScript

  •4•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• howto-use-R-for-dataanalysis

  Public
  How do I tidy, download, and graph my data?

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Jan 22, 2021Jan 22, 2021

• haplotype-map-embed

  Public
  Provide a page for each haplotype-map in Tripal site.

  PHP

  •0•1•0•0•Updated Jan 11, 2021Jan 11, 2021

• germ_summary

  Public archive
  Provides a matrix describing the number of germplasm (chado.stocks) per organism combination.

  breedingwildtripal+ 1germplasm

  PHP

  •0•0•1•1•Updated Apr 15, 2020Apr 15, 2020

• germcollection

  Public archive
  Provides Fields and views to support germplasm collections in Tripal

  PHP

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Apr 15, 2020Apr 15, 2020

• our-modules

  Public
  University of Saskatchewan, Pulse Bioinformatics Tripal modules.

  CSS

  •1•0•0•0•Updated Nov 16, 2019Nov 16, 2019

• kp_fields

  Public
  A collection of fields used by KnowPulse.

  PHP

  •0•0•0•0•Updated Nov 13, 2019Nov 13, 2019

• cvitembed

  Public
  Tripal module to embed CViTjs diagrams into a Tripal site.

  visualizationintegrationcvitjs+ 2tripal3-compatibletripal

  JavaScript

  •0•0•0•0•Updated Oct 24, 2019Oct 24, 2019