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    10 repositories

    • ThermoMPNN-D

      Public
      Extension of ThermoMPNN for double mutant predictions
      Python
      •
      MIT License
      •7•19•0•0•Updated Jan 14, 2025Jan 14, 2025

    • LynD-substrate-modeling

      Public
      Modeling LynD substrate specificity data
      Jupyter Notebook
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • alphafold3

      Public
      Kuhlman Lab Installation of AlphaFold3
      Python
      •
      Other
      •1•11•0•0•Updated Jan 2, 2025Jan 2, 2025

    • proteinmpnn

      Public
      our in-house version of ProteinMPNN
      Python
      •
      MIT License
      •2•11•0•0•Updated Nov 15, 2024Nov 15, 2024

    • ThermoMPNN

      Public
      GNN trained to predict changes in thermodynamic stability for protein point mutants
      Python
      •
      MIT License
      •22•135•0•0•Updated Sep 9, 2024Sep 9, 2024

    • RFdiffusion

      Public
      Kuhlman Lab Installation of RFdiffusion
      Python
      •
      Other
      •367•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • PIPPack

      Public
      Implementation of Protein Invariant Point Packer (PIPPack)
      Python
      •
      MIT License
      •8•30•0•0•Updated May 28, 2024May 28, 2024

    • evopro

      Public
      Python
      •
      MIT License
      •7•72•1•0•Updated Apr 22, 2024Apr 22, 2024

    • alphafold2

      Public
      our in-house version of AF2 including AF2-Multimer
      Python
      •0•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • RosettaFold2

      Public
      our in house version of RosettaFold2
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 4, 2023Aug 4, 2023