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@GMOD Generic Model Organism Database Project

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    101 repositories

    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      visualizationbioinformaticsgenomicsjbrowse
      TypeScript
      •
      Apache License 2.0
      •63•216•311•19•Updated Jan 17, 2025Jan 17, 2025

    • vcf-js

      Public
      High performance Variant Call Format (VCF) parser in pure JavaScript
      TypeScript
      •
      MIT License
      •5•24•1•0•Updated Jan 16, 2025Jan 16, 2025

    • generic-filehandle2

      Public
      modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • ixixx-js

      Public
      TypeScript
      •
      MIT License
      •2•3•1•0•Updated Jan 16, 2025Jan 16, 2025

    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • indexedfasta-js

      Public
      Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      •
      MIT License
      •4•12•0•1•Updated Jan 16, 2025Jan 16, 2025

    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      •
      MIT License
      •2•4•0•0•Updated Jan 16, 2025Jan 16, 2025

    • bed-js

      Public
      A parser for the BED format including autoSql support
      TypeScript
      •1•5•1•1•Updated Jan 16, 2025Jan 16, 2025

    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      •
      MIT License
      •5•14•2•0•Updated Jan 16, 2025Jan 16, 2025

    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      •
      MIT License
      •6•8•8•0•Updated Jan 16, 2025Jan 16, 2025

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      genomics
      TypeScript
      •
      MIT License
      •9•18•8•1•Updated Jan 16, 2025Jan 16, 2025

    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      •
      MIT License
      •9•22•9•1•Updated Jan 16, 2025Jan 16, 2025

    • ucsc-hub-js

      Public
      read and write UCSC track and assembly hub files in node or the browser
      TypeScript
      •
      MIT License
      •2•5•5•1•Updated Jan 16, 2025Jan 16, 2025

    • Apollo3

      Public
      JBrowse 2 plugin for editing annotations on an Apollo server
      TypeScript
      •
      Apache License 2.0
      •4•10•58•13•Updated Jan 16, 2025Jan 16, 2025

    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      •0•0•1•1•Updated Jan 15, 2025Jan 15, 2025

    • gmod.github.io

      Public
      GMOD Website, derived from gmod.github.io
      HTML
      •1•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • react-msaview

      Public
      A multiple sequence alignment viewer
      TypeScript
      •
      MIT License
      •1•19•25•0•Updated Jan 6, 2025Jan 6, 2025

    • jbrowse-plugin-list

      Public
      List of plugins for the JBrowse 2 plugin store.
      5•2•2•2•Updated Jan 3, 2025Jan 3, 2025

    • jbrowse-plugin-multilevel-linear-view

      Public
      JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels
      TypeScript
      •
      Apache License 2.0
      •0•0•8•0•Updated Jan 3, 2025Jan 3, 2025

    • gff-js

      Public
      parse and format streams of GFF3, for node or webpack
      genomics
      TypeScript
      •
      MIT License
      •6•11•1•2•Updated Jan 3, 2025Jan 3, 2025

    • bgzf-filehandle

      Public
      Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      •
      MIT License
      •4•7•5•2•Updated Dec 29, 2024Dec 29, 2024

    • abortable-promise-cache

      Public
      add AbortController support to a cache of async requests
      TypeScript
      •
      MIT License
      •2•6•1•5•Updated Dec 15, 2024Dec 15, 2024

    • generic-filehandle

      Public
      use a subset of the NodeJS promise-based file handle API to access both local and remote files
      TypeScript
      •6•4•4•3•Updated Dec 12, 2024Dec 12, 2024

    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      •
      Apache License 2.0
      •2•0•0•1•Updated Dec 12, 2024Dec 12, 2024

    • jbrowse-react-linear-genome-view-vite-demo

      Public
      TypeScript
      •1•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • jbrowse-react-app-vite-demo

      Public
      TypeScript
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • jbrowse-react-app-nextjs-demo

      Public
      TypeScript
      •0•1•1•0•Updated Dec 10, 2024Dec 10, 2024

    • jbrowse-react-linear-genome-view-nextjs-demo

      Public
      TypeScript
      •1•1•1•0•Updated Dec 10, 2024Dec 10, 2024

    • jbrowse-react-linear-genome-view-rsbuild-demo

      Public
      TypeScript
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • jbrowse-react-linear-genome-view-farm-demo

      Public
      TypeScript
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024