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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,134 +1,27 @@ | ||
| set :author, "ontoportal-lirmm" | ||
| set :application, "ontologies_api" | ||
| set :repo_url, "https://github.com/#{fetch(:author)}/#{fetch(:application)}.git" | ||
| set :repo_url, "[email protected]:biodivportal/ontologies_api.git" | ||
| set :user, 'ontoportal' | ||
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| set :deploy_via, :remote_cache | ||
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| # Default branch is :master | ||
| # ask :branch, proc { `git rev-parse --abbrev-ref HEAD`.chomp } | ||
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| # Default deploy_to directory is /var/www/my_app | ||
| set :deploy_to, "/srv/ontoportal/#{fetch(:application)}" | ||
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| # Default value for :scm is :git | ||
| # set :scm, :git | ||
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| # Default value for :format is :pretty | ||
| # set :format, :pretty | ||
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| # Default value for :log_level is :debug | ||
| set :log_level, :error | ||
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| # Default value for :pty is false | ||
| # set :pty, true | ||
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| # Default value for :linked_files is [] | ||
| # set :linked_files, %w{config/database.yml} | ||
| set :deploy_to, '/srv/ontoportal/ontologies_api' | ||
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| # Default value for linked_dirs is [] | ||
| # set :linked_dirs, %w{log tmp/pids tmp/cache tmp/sockets vendor/bundle public/system} | ||
| set :linked_dirs, %w{log vendor/bundle tmp/pids tmp/sockets public/system} | ||
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| # Default value for default_env is {} | ||
| # set :default_env, { path: "/opt/ruby/bin:$PATH" } | ||
| set :stages, %w[appliance] | ||
| set :default_stage, 'appliance' | ||
| set :stage, 'appliance' | ||
| set :application, 'ontologies_api' | ||
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| # Default value for keep_releases is 5 | ||
| set :keep_releases, 5 | ||
| set :config_folder_path, "#{fetch(:application)}/#{fetch(:stage)}" | ||
| # SSH parameters | ||
| set :ssh_port, 22 | ||
| set :pty, true | ||
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| # If you want to restart using `touch tmp/restart.txt`, add this to your config/deploy.rb: | ||
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| SSH_JUMPHOST = ENV.include?('SSH_JUMPHOST') ? ENV['SSH_JUMPHOST'] : 'jumpbox.hostname.com' | ||
| SSH_JUMPHOST_USER = ENV.include?('SSH_JUMPHOST_USER') ? ENV['SSH_JUMPHOST_USER'] : 'username' | ||
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| JUMPBOX_PROXY = "#{SSH_JUMPHOST_USER}@#{SSH_JUMPHOST}" | ||
| set :ssh_options, { | ||
| user: 'ontoportal', | ||
| forward_agent: 'true', | ||
| keys: %w(config/deploy_id_rsa), | ||
| auth_methods: %w(publickey), | ||
| # use ssh proxy if API servers are on a private network | ||
| proxy: Net::SSH::Proxy::Command.new("ssh #{JUMPBOX_PROXY} -W %h:%p") | ||
| } | ||
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| # private git repo for configuraiton | ||
| PRIVATE_CONFIG_REPO = ENV.include?('PRIVATE_CONFIG_REPO') ? ENV['PRIVATE_CONFIG_REPO'] : 'https://[email protected]/your_organization/ontoportal-configs.git' | ||
| desc "Check if agent forwarding is working" | ||
| task :forwarding do | ||
| on roles(:all) do |h| | ||
| if test("env | grep SSH_AUTH_SOCK") | ||
| info "Agent forwarding is up to #{h}" | ||
| else | ||
| error "Agent forwarding is NOT up to #{h}" | ||
| end | ||
| end | ||
| end | ||
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| # inspired by http://nathaniel.talbott.ws/blog/2013/03/14/post-deploy-smoke-tests/ | ||
| desc 'Run smoke test' | ||
| task :smoke_test do | ||
| on roles(:app) do | ||
| curl_opts = '--max-time 240 --connect-timeout 15 --retry 2' | ||
| failed_tests = [] | ||
| curl_result = `curl #{curl_opts} -s -w "%{http_code}" "#{host}/documentation" -o /dev/null` | ||
| failed_tests << 'Documentation smoke test FAILURE.' unless (curl_result == '200') | ||
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| if defined?(APIKEY) | ||
| curl_result = `curl #{curl_opts} -s -w "%{http_code}" "#{host}/ontologies?include=all&include_views=true&apikey=#{APIKEY}" -o /dev/null` | ||
| failed_tests << 'Ontologies smoke test FAILURE.' unless (curl_result == '200') | ||
| end | ||
| if failed_tests.empty? | ||
| puts "smoke test passed on #{host}" | ||
| else | ||
| puts "\n\n****************************\n\n" | ||
| puts "SMOKE TEST FAILED on #{host}\n\n" | ||
| failed_tests.each do |failure| | ||
| puts failure | ||
| end | ||
| puts "\n\n****************************\n\n" | ||
| end | ||
| end | ||
| end | ||
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| namespace :deploy do | ||
| # Source code | ||
| set :repository_cache, "git_cache" | ||
| set :deploy_via, :remote_cache | ||
| set :ssh_options, { :forward_agent => true } | ||
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| desc 'Incorporate the private repository content' | ||
| # Get cofiguration from repo if PRIVATE_CONFIG_REPO env var is set | ||
| # or get config from local directory if LOCAL_CONFIG_PATH env var is set | ||
| task :get_config do | ||
| if defined?(PRIVATE_CONFIG_REPO) | ||
| TMP_CONFIG_PATH = "/tmp/#{SecureRandom.hex(15)}".freeze | ||
| on roles(:app) do | ||
| execute "git clone -q #{PRIVATE_CONFIG_REPO} #{TMP_CONFIG_PATH}" | ||
| execute "rsync -av #{TMP_CONFIG_PATH}/#{fetch(:config_folder_path)}/ #{release_path}/" | ||
| execute "rm -rf #{TMP_CONFIG_PATH}" | ||
| end | ||
| elsif defined?(LOCAL_CONFIG_PATH) | ||
| on roles(:app) do | ||
| execute "rsync -av #{LOCAL_CONFIG_PATH}/#{fetch(:application)}/ #{release_path}/" | ||
| end | ||
| end | ||
| end | ||
| # Linked files and directories | ||
| append :linked_files, "config/environments/appliance.rb" | ||
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| desc 'Restart application' | ||
| task :restart do | ||
| on roles(:app), in: :sequence, wait: 5 do | ||
| # Your restart mechanism here, for example: | ||
| # execute :touch, release_path.join('tmp/restart.txt') | ||
| execute 'sudo systemctl restart unicorn' | ||
| execute 'sleep 5' | ||
| end | ||
| end | ||
| append :linked_dirs, 'logs', '.bundle' | ||
| set :keep_releases, 2 | ||
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| after :updating, :get_config | ||
| after :publishing, :restart | ||
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| after :restart, :clear_cache do | ||
| on roles(:web), in: :groups, limit: 3, wait: 10 do | ||
| # Here we can do anything such as: | ||
| # within release_path do | ||
| # execute :rake, 'cache:clear' | ||
| # end | ||
| end | ||
| end | ||
| end |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| set :branch, 'master' | ||
| set :server, '192.168.0.22' | ||
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| server fetch(:server), user: fetch(:user), roles: %w{web app} | ||
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| set :ssh_options, { | ||
| user: 'ontoportal', | ||
| forward_agent: 'true', | ||
| #keys: %w(config/deploy_id_rsa), | ||
| auth_methods: %w(publickey), | ||
| # use ssh proxy if UI servers are on a private network | ||
| proxy: Net::SSH::Proxy::Command.new('ssh [email protected] -W %h:%p') | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,14 @@ | ||
| # Simple Role Syntax | ||
| # ================== | ||
| # Supports bulk-adding hosts to roles, the primary | ||
| # server in each group is considered to be the first | ||
| # unless any hosts have the primary property set. | ||
| # Don't declare `role :all`, it's a meta role | ||
| role :app, %w{testportal.lirmm.fr} | ||
| role :db, %w{testportal.lirmm.fr} # sufficient to run db:migrate only on one system | ||
| # Extended Server Syntax | ||
| # ====================== | ||
| # This can be used to drop a more detailed server | ||
| # definition into the server list. The second argument | ||
| # something that quacks like a hash can be used to set | ||
| # extended properties on the server. | ||
| #server 'example.com', user: 'deploy', roles: %w{web app}, my_property: :my_value | ||
| set :log_level, :error | ||
| set :branch, ENV.include?('BRANCH') ? ENV['BRANCH'] : 'test' | ||
| set :branch, 'master' | ||
| set :server, 'biodivportal.gfbio.dev' | ||
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| server fetch(:server), user: fetch(:user), roles: %w{web app} | ||
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| set :ssh_options, { | ||
| user: 'ontoportal', | ||
| forward_agent: 'true', | ||
| port: 30082 | ||
| #keys: %w(config/deploy_id_rsa), | ||
| #auth_methods: %w(publickey), | ||
| # use ssh proxy if UI servers are on a private network | ||
| #proxy: Net::SSH::Proxy::Command.new('ssh [email protected] -W %h:%p') | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,51 @@ | ||
| # coding: utf-8 | ||
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| $CLOUD_PROVIDER = '' | ||
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| # ---------------------------------------------------------------------- | ||
| # OntoPortal Customization | ||
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| $HOSTNAME = $UI_HOSTNAME = "biodivportal.gfbio.dev" | ||
| $REST_HOSTNAME = "data.#{$HOSTNAME}" | ||
| $REST_PORT = nil | ||
| $REST_URL_PREFIX = "https://#{[$REST_HOSTNAME, $REST_PORT].compact.join(':')}/" | ||
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| # Organization info | ||
| #$ORG = 'NCBO' | ||
| #$ORG_URL = 'http://ontoportal.org' | ||
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| # Site name (required) | ||
| $SITE = 'BiodivPortal' | ||
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| # Unique string representing the UI's id for use with the BioPortal Core | ||
| # This api key is automatically generated on first boot and updated here | ||
| $API_KEY = "" | ||
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| # REST core service address | ||
| #$REST_URL = "http://#{$REST_HOSTNAME}:#{$REST_PORT}" | ||
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| # Help page, launched from Support -> Help menu item in top navigation bar. | ||
| #$WIKI_HELP_PAGE = 'https://www.bioontology.org/wiki/index.php/BioPortal_Help' | ||
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| # Google Analytics ID (optional) | ||
| #$ANALYTICS_ID = '' | ||
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| # Announcements mailman mailing list REQUEST address, EX: [email protected] | ||
| # NOTE: You must use the REQUEST address for the mailing list. ONLY WORKS WITH MAILMAN LISTS. | ||
| #$ANNOUNCE_LIST = '[email protected]' | ||
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| # Email addresses used for sending notifications (errors, feedback, support) | ||
| #$SUPPORT_EMAIL = '[email protected]' | ||
| #$ADMIN_EMAIL = '[email protected]' | ||
| #$ERROR_EMAIL = '[email protected]' | ||
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| # reCAPTCHA | ||
| # In order to use reCAPTCHA on the user account creation page: | ||
| # 1. Obtain a key from reCAPTCHA: http://recaptcha.net | ||
| # 2. Include the corresponding keys below (between the single quotes) | ||
| # 3. Set the USE_RECAPTCHA option to 'true' | ||
| #ENV['USE_RECAPTCHA'] = 'false' | ||
| #ENV['RECAPTCHA_PUBLIC_KEY'] = '' | ||
| #ENV['RECAPTCHA_PRIVATE_KEY'] = '' | ||
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