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obophenotype

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  1. human-phenotype-ontology human-phenotype-ontology Public

    Ontology for the description of human clinical features

    Makefile 297 53

  2. cell-ontology cell-ontology Public

    An ontology of cell types

    Makefile 153 50

  3. uberon uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 135 30

  4. upheno upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    Makefile 78 18

  5. bio-attribute-ontology bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    Jupyter Notebook 27 11

  6. ncbitaxon ncbitaxon Public

    Build for NCBITaxon

    Python 27 7

Repositories

Showing 10 of 63 repositories
  • upheno-dev Public

    Framework for the automated construction of uPheno 2.0

    obophenotype/upheno-dev’s past year of commit activity
    Jupyter Notebook 5 MIT 5 33 7 Updated Jan 18, 2025
  • upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    obophenotype/upheno’s past year of commit activity
    Makefile 78 CC0-1.0 18 249 (5 issues need help) 18 Updated Jan 18, 2025
  • xenopus-phenotype-ontology Public

    XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and X. tropicalis.

    obophenotype/xenopus-phenotype-ontology’s past year of commit activity
    Makefile 9 3 20 0 Updated Jan 18, 2025
  • cell-ontology Public

    An ontology of cell types

    obophenotype/cell-ontology’s past year of commit activity
    Makefile 153 CC-BY-4.0 50 289 24 Updated Jan 17, 2025
  • chebi_obo_slim Public

    A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

    obophenotype/chebi_obo_slim’s past year of commit activity
    Ruby 3 1 2 3 Updated Jan 17, 2025
  • pro_obo_slim Public

    A repo to generate a pro slim for the OBO phenotype organisation

    obophenotype/pro_obo_slim’s past year of commit activity
    Makefile 1 1 0 0 Updated Jan 17, 2025
  • human-phenotype-ontology Public

    Ontology for the description of human clinical features

    obophenotype/human-phenotype-ontology’s past year of commit activity
    Makefile 297 53 253 8 Updated Jan 16, 2025
  • developmental-stage-ontologies Public

    Source files for various species-specific stage ontologies

    obophenotype/developmental-stage-ontologies’s past year of commit activity
    Makefile 10 5 52 2 Updated Jan 15, 2025
  • bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    obophenotype/bio-attribute-ontology’s past year of commit activity
    Jupyter Notebook 27 CC0-1.0 11 79 7 Updated Jan 15, 2025
  • uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    obophenotype/uberon’s past year of commit activity
    Emacs Lisp 135 30 307 (2 issues need help) 17 Updated Jan 15, 2025
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